NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2900.1 Public Homo sapiens 3 THOC7 24 110 108 CCDS HistoryNCBI Gene:80145Re-query CCDS DB by CCDS ID:2900.1Re-query CCDS DB by GeneID:80145See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2900.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295899.10 ENSP00000295899.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295899.10Link to Ensembl Protein Viewer:ENSP00000295899.5Re-query CCDS DB by Nucleotide ID:ENST00000295899Re-query CCDS DB by Protein ID:ENSP00000295899
Original member Current member NCBI NM_025075.4 NP_079351.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025075.4Link to Protein Sequence:NP_079351.2Re-query CCDS DB by Nucleotide ID:NM_025075Re-query CCDS DB by Protein ID:NP_079351Link to BLAST:NP_079351.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079351.2 204 Q6I9Y2 204 100% 0 0

Chromosomal Locations for CCDS 2900.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 63834132 63834199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63835154 63835223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63835324 63835390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63836301 63836358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63837976 63838062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63838372 63838499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63839656 63839773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63863772 63863790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGGGAGCCGTGACTGACGACGAAGTTATACGGAAGCGTCTCCTCATTGATGGAGATGGTGCTGGAGATG
ATCGGAGAATTAATCTGCTAGTGAAGAGTTTCATTAAATGGTGCAACTCTGGGTCCCAGGAAGAGGGATA
TAGCCAGTACCAACGTATGCTGAGCACGCTGTCTCAATGTGAATTTTCAATGGGCAAAACTTTACTAGTA
TATGATATGAATCTCAGAGAAATGGAAAATTATGAAAAAATTTACAAGGAAATAGAATGTAGCATAGCTG
GAGCACATGAAAAAATTGCTGAGTGCAAAAAGCAAATTCTTCAAGCAAAACGAATACGAAAAAATCGCCA
AGAATATGATGCTTTGGCAAAAGTGATTCAGCACCATCCAGACAGGCATGAGACATTAAAGGAACTAGAG
GCTCTGGGAAAAGAATTAGAGCATCTTTCACACATTAAAGAAAGTGTTGAAGATAAGCTGGAATTGAGAC
GGAAACAGTTTCATGTTCTTCTTAGTACCATCCATGAACTTCAGCAAACATTGGAAAATGATGAAAAACT
CTCAGAGGTAGAAGAAGCTCAGGAAGCAAGCATGGAAACAGATCCTAAGCCATAG

Translation (204 aa):
MGAVTDDEVIRKRLLIDGDGAGDDRRINLLVKSFIKWCNSGSQEEGYSQYQRMLSTLSQCEFSMGKTLLV
YDMNLREMENYEKIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELE
ALGKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLENDEKLSEVEEAQEASMETDPKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH