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Report for CCDS29008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29008.1 Public Mus musculus 17 Prkce 23 108 98 CCDS HistoryNCBI Gene:18754Re-query CCDS DB by CCDS ID:29008.1Re-query CCDS DB by GeneID:18754See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29008.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097274.2 ENSMUSP00000094873.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097274.2Link to Ensembl Protein Viewer:ENSMUSP00000094873.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000097274Re-query CCDS DB by Protein ID:ENSMUSP00000094873
Original member Current member EBI ENSMUST00000097275.8 ENSMUSP00000094874.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097275.8Link to Ensembl Protein Viewer:ENSMUSP00000094874.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000097275Re-query CCDS DB by Protein ID:ENSMUSP00000094874
Original member Current member NCBI NM_011104.3 NP_035234.1 Accepted alive Link to Nucleotide Sequence:NM_011104.3Link to Protein Sequence:NP_035234.1Re-query CCDS DB by Nucleotide ID:NM_011104Re-query CCDS DB by Protein ID:NP_035234Link to BLAST:NP_035234.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035234.1 737 P16054 737 100% 0 0

Chromosomal Locations for CCDS 29008.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 86168593 86168940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 86353555 86353618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 86474317 86474476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 86475515 86475549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 86476806 86476891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 86482120 86482249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 86488160 86488302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 86490751 86490847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 86493221 86493420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 86495938 86496111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 86559151 86559305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 86619892 86620030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 86625325 86625513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 86630061 86630207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 86654541 86654687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2214 nt):
ATGGTAGTGTTCAATGGCCTTCTTAAGATCAAAATCTGCGAGGCGGTGAGCTTGAAGCCCACAGCCTGGT
CGCTGCGCCATGCGGTGGGACCCCGGCCACAGACGTTCCTTTTGGACCCCTACATTGCCCTTAACGTGGA
CGACTCGCGCATCGGCCAAACAGCCACCAAGCAAAAGACCAACAGCCCGGCCTGGCACGATGAGTTCGTC
ACCGATGTGTGCAATGGGCGCAAGATCGAGCTGGCTGTCTTTCACGACGCTCCTATCGGCTACGACGACT
TCGTGGCCAACTGCACCATCCAGTTCGAGGAGCTGCTGCAGAATGGGAGCCGTCACTTCGAGGACTGGAT
TGACCTGGAGCCAGAAGGAAAAGTGTACGTGATCATCGATCTCTCGGGATCATCGGGTGAAGCCCCTAAA
GACAATGAAGAACGAGTGTTCAGGGAGCGTATGCGGCCAAGGAAGCGGCAAGGGGCTGTCAGGCGCAGGG
TCCACCAGGTCAATGGCCACAAGTTCATGGCCACCTACTTGCGGCAACCCACCTACTGCTCCCACTGCAG
AGATTTCATCTGGGGTGTCATAGGAAAACAGGGATATCAATGTCAAGTTTGCACTTGCGTTGTCCACAAG
CGATGTCATGAGCTCATTATTACAAAGTGCGCTGGGCTGAAGAAACAGGAAACCCCTGACGAGGTGGGCT
CCCAACGGTTCAGCGTCAACATGCCCCACAAGTTCGGGATCCACAACTACAAGGTCCCCACGTTCTGTGA
CCACTGTGGGTCCCTGCTCTGGGGCCTCTTGCGGCAGGGCTTGCAGTGTAAAGTCTGCAAAATGAATGTT
CACCGGCGATGTGAGACCAATGTGGCTCCCAACTGTGGGGTAGACGCCAGAGGAATTGCCAAAGTGCTGG
CTGACCTTGGTGTTACTCCAGACAAAATCACCAACAGTGGCCAAAGGAGGAAAAAGCTCGCTGCTGGTGC
TGAGTCCCCACAGCCGGCTTCTGGAAACTCCCCATCTGAAGACGACCGATCCAAGTCAGCGCCCACCTCC
CCTTGTGACCAGGAACTAAAAGAACTTGAAAACAACATTCGGAAGGCCTTGTCATTTGACAACCGAGGAG
AGGAGCACCGAGCGTCGTCGGCCACCGATGGCCAGCTGGCAAGCCCCGGAGAGAACGGGGAAGTCCGGCC
AGGCCAGGCCAAGCGCTTGGGGCTGGATGAGTTCAACTTCATCAAGGTGTTGGGCAAAGGCAGCTTTGGC
AAGGTCATGTTGGCGGAACTCAAAGGCAAAGATGAAGTCTACGCTGTGAAGGTCTTGAAGAAGGACGTTA
TCCTACAAGACGATGATGTGGACTGCACAATGACAGAGAAGAGGATTTTGGCTCTGGCTCGGAAACACCC
TTATCTAACCCAACTCTATTGCTGCTTCCAGACCAAGGACCGCCTCTTCTTCGTCATGGAATATGTAAAT
GGTGGAGACCTCATGTTCCAGATTCAGCGGTCCCGAAAATTTGATGAGCCTCGTTCTCGGTTCTATGCCG
CAGAGGTCACATCAGCCCTCATGTTTCTCCACCAGCACGGAGTGATCTACAGGGATTTGAAACTGGACAA
CATCCTTCTAGATGCAGAAGGCCACTGCAAGCTGGCTGACTTTGGGATGTGCAAGGAAGGGATTATGAAT
GGTGTGACAACTACCACCTTCTGTGGGACTCCTGACTACATAGCTCCAGAGATCCTACAGGAGTTGGAGT
ACGGCCCCTCAGTGGACTGGTGGGCCCTGGGGGTGCTGATGTACGAGATGATGGCTGGGCAGCCCCCCTT
TGAAGCTGACAACGAGGACGACTTGTTCGAATCCATCCTTCATGATGATGTTCTCTATCCTGTCTGGCTT
AGCAAGGAAGCTGTCAGCATCCTGAAAGCTTTCATGACCAAGAACCCGCACAAGCGCCTGGGCTGTGTGG
CAGCGCAGAACGGGGAGGACGCCATCAAGCAACATCCATTCTTCAAGGAGATTGACTGGGTACTGCTGGA
GCAGAAGAAAATCAAGCCCCCCTTCAAGCCGAGAATTAAAACCAAAAGAGATGTCAATAACTTTGACCAA
GACTTTACGCGGGAAGAGCCAATACTTACACTTGTGGATGAAGCAATCATTAAGCAGATCAACCAGGAAG
AATTCAAAGGCTTCTCCTACTTTGGTGAAGACCTGATGCCCTGA

Translation (737 aa):
MVVFNGLLKIKICEAVSLKPTAWSLRHAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFV
TDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPEGKVYVIIDLSGSSGEAPK
DNEERVFRERMRPRKRQGAVRRRVHQVNGHKFMATYLRQPTYCSHCRDFIWGVIGKQGYQCQVCTCVVHK
RCHELIITKCAGLKKQETPDEVGSQRFSVNMPHKFGIHNYKVPTFCDHCGSLLWGLLRQGLQCKVCKMNV
HRRCETNVAPNCGVDARGIAKVLADLGVTPDKITNSGQRRKKLAAGAESPQPASGNSPSEDDRSKSAPTS
PCDQELKELENNIRKALSFDNRGEEHRASSATDGQLASPGENGEVRPGQAKRLGLDEFNFIKVLGKGSFG
KVMLAELKGKDEVYAVKVLKKDVILQDDDVDCTMTEKRILALARKHPYLTQLYCCFQTKDRLFFVMEYVN
GGDLMFQIQRSRKFDEPRSRFYAAEVTSALMFLHQHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGIMN
GVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDLFESILHDDVLYPVWL
SKEAVSILKAFMTKNPHKRLGCVAAQNGEDAIKQHPFFKEIDWVLLEQKKIKPPFKPRIKTKRDVNNFDQ
DFTREEPILTLVDEAIIKQINQEEFKGFSYFGEDLMP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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