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Report for CCDS29087.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29087.1 Public Mus musculus 18 Trappc8 23 108 98 CCDS HistoryNCBI Gene:75964Re-query CCDS DB by CCDS ID:29087.1Re-query CCDS DB by GeneID:75964See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29087.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097658.1 ENSMUSP00000095262.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097658.1Link to Ensembl Protein Viewer:ENSMUSP00000095262.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000097658Re-query CCDS DB by Protein ID:ENSMUSP00000095262
Original member Current member NCBI NM_029491.2 NP_083767.2 Accepted alive Link to Nucleotide Sequence:NM_029491.2Link to Protein Sequence:NP_083767.2Re-query CCDS DB by Nucleotide ID:NM_029491Re-query CCDS DB by Protein ID:NP_083767Link to BLAST:NP_083767.2

Chromosomal Locations for CCDS 29087.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 20846368 20846579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20847118 20847312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20850898 20851006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20852630 20852854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20854945 20855076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20860433 20860538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20862895 20862995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20863468 20863618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20865027 20865142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20865950 20866206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20867760 20867853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20870599 20870752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20873883 20874057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20874615 20874704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20885063 20885257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20895911 20896067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2469 nt):
ATGGCCCAGTGCGTGCAGTCGGTGCAGGAGCTCATCCCCGACTCCTTCGTCCCCTGCGTCGCCGCGCTGT
GCAGCGACGAAGCCGAGCGGCTCACCCGCCTCAACCACCTCAGCTTCTCCGAGCTGCTCAAGCCCTTCTC
TCGCCTCACTTCCGAAGTTCACATGAGAGATCCTAATAATCAACTGCATATAATTAAAAATTTGAAGATA
GCAGTAAGCAACATTGTCACCCAGCCACCTCAGCCGGGAGCCATTGGGAAGCTTTTGAATGATGTTGTTT
CTGGCAGCCAGCCTGCAGAAGGATTAGTCGCTAATGTGATTACAGCAGGAGATTATGACCTTAACATAAG
TGCTACTACTCCATGGTTTGAGTCTTACAGAGAGACCTTTCTGCAGTCCATGCCAGCATCAGATCATGAG
TTTCTGAATCACTATTTAGCATGTATGCTGGTGGCATCGTCTGGTGAAGCTGAGCCTATGGAACAGTTTT
CAAAGTTGTCACAGGAACAGCATCGAATTCAGCACAACAATGATTATTCCTATCCTAAGTGGTTTATCCC
AAATACACTTAAATATTACGTGCTTTTGCATGATGTAACTTCAGGAGATGAACAAAGGGCTGAATCAATT
TATGAAGAAATGAAACAGAAATATGGAACTCAGGGTTGCTATTTACTTAAAATCAATTCTCGAGCACCAA
ATCGAGCATCAGATGAACAGATACCAGATCCGTGGAGTCAGTATCTCCAGAAAAATAGTATTCAAAACCA
GGAATCATATGAAGATGGCCCTTGTACTATGACCTCCAGTAAGAATTCTGATAGTAACTTGCTTTCATTG
GATGGACTAGATAACGAAGTCAAAGTAGATGGCCTACCAAATAACTTCAGAATTCATCCACTTCAAATAG
ACCAATGCGGTGACCCTCCTAACAATACTGACGGCTCAGAGTCAAAGTCTGCTTCTTCAGTTCACGAGAC
AAAGAAAGCAAGTACTGCAGTGATTCGTGGTGCTTGCTTAACACTCACTGACCATGATAGAATCCGACAG
TTTATACAAGAGTTTACATTCCGTGGCCTTTTGCCACACATAGAGAAAACAATTCGTCAGTTAAATGATC
AGCTAATATCAAGGAAAGGTTTGAGTCGATCTCTGTTTTCTGCCACTAAGAAATGGTTTAGTGGTAGTAA
AGTTCCAGAAAAGAGCATTAATGAGCTGAAGAATACATCTGGGTTGTTGTATCCGCCAGAAGCGCCCGAG
CTTCAGATCAGGAAGATGGCTGACTTGTGCTTCTTGGTGCAACATTATGATTTGGCTTACAGTTGTTATC
ACACTGCAAAGAAGGATTTTCTTAACGATCAAGCAATGCTTTATGCAGCAGGTGCCTTGGAAATGGCAGC
AGTGTCAGCCTTTCTTCAGCCAGGAGCTCCTAGGCCATACCCTGCTCATTACATGGACACAGCAATTCAG
ACATACAGGGATATCTGCAAGAATATGGTGTTGGCTGAAAGATGTGTGTTGCTTAGTGCTGAAATTTTAA
AAAGTCAAAGCAAGTACTCAGAGGCTGCAGCTCTTCTGATACGATTGACAAGTGAGGATTCTGATCTCCG
AAGTGCCCTTCTTTTGGAACAGGCTGCACATTGCTTCATAAACATGAAGAGTCCCATGGTTAGAAAATAC
GCATTTCATATGATCCTGGCAGGCCACCGTTTTAGTAAAGCAGGGCAGAAAAAGCATGCTTTGCGCTGCT
ATTGTCAAGCCATGCAAGTTTACAAAGGAAAGGGCTGGTCTCTGGCAGAGGATCACATCAACTTCACCAT
TGGGCGCCAGTCCTATACTCTGAGGCAGCTGGACAATGCTGTTTCTGCTTTTAGACACATTTTAATCAAT
GAAAGCAAACAGTCTGCTGCTCAGCAAGGAGCCTTCCTCAGAGAATATCTTTATGTTTATAAGAATGTAA
ATCAGCTGTCACCAGATGGCCCTTTACCACAGCTTCCCTTACCATACATTAACAGTTCAGCAACACGGGT
TTTCTTCGGCCATGACAGACGACCAGCAGATGGTGAAAAGCAAGCGGCTACTCATATAAGTCTTGATCAA
GAATATGACTCTGAGTCATCCCAGCAGTGGCGGGAACTTGAGGAACATGTTGTGGCTGTGGCTAATAAAG
GAGTAATTCCATCCAGTTTCTATCCTACACAGTATTGTCTGAACAGTTACTCCGATAACTCCAGGTTTCC
ACTTGCAGTTGTAGAAGAGCCAATTACTGTGGAAGTGGCTTTTAGAAACCCTTTAAAAGTTCCGCTTTTG
CTGTCTGATTTGTCATTACTCTGGAAGTTTCAGCCTAAAGATGCCAGTGGGAAAGACATTGAAAAAGTGA
AAGAACGAGTAAGTTATTGCAGGTATCACGACGCGCCTGACTTCCGGTGCTACCACTCAGTTCACCTTAG
ATATAAACCTAAGGTATAA

Translation (822 aa):
MAQCVQSVQELIPDSFVPCVAALCSDEAERLTRLNHLSFSELLKPFSRLTSEVHMRDPNNQLHIIKNLKI
AVSNIVTQPPQPGAIGKLLNDVVSGSQPAEGLVANVITAGDYDLNISATTPWFESYRETFLQSMPASDHE
FLNHYLACMLVASSGEAEPMEQFSKLSQEQHRIQHNNDYSYPKWFIPNTLKYYVLLHDVTSGDEQRAESI
YEEMKQKYGTQGCYLLKINSRAPNRASDEQIPDPWSQYLQKNSIQNQESYEDGPCTMTSSKNSDSNLLSL
DGLDNEVKVDGLPNNFRIHPLQIDQCGDPPNNTDGSESKSASSVHETKKASTAVIRGACLTLTDHDRIRQ
FIQEFTFRGLLPHIEKTIRQLNDQLISRKGLSRSLFSATKKWFSGSKVPEKSINELKNTSGLLYPPEAPE
LQIRKMADLCFLVQHYDLAYSCYHTAKKDFLNDQAMLYAAGALEMAAVSAFLQPGAPRPYPAHYMDTAIQ
TYRDICKNMVLAERCVLLSAEILKSQSKYSEAAALLIRLTSEDSDLRSALLLEQAAHCFINMKSPMVRKY
AFHMILAGHRFSKAGQKKHALRCYCQAMQVYKGKGWSLAEDHINFTIGRQSYTLRQLDNAVSAFRHILIN
ESKQSAAQQGAFLREYLYVYKNVNQLSPDGPLPQLPLPYINSSATRVFFGHDRRPADGEKQAATHISLDQ
EYDSESSQQWRELEEHVVAVANKGVIPSSFYPTQYCLNSYSDNSRFPLAVVEEPITVEVAFRNPLKVPLL
LSDLSLLWKFQPKDASGKDIEKVKERVSYCRYHDAPDFRCYHSVHLRYKPKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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