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Report for CCDS29216.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29216.1 Public Mus musculus 18 Ppp2r2b 23 108 98 CCDS HistoryNCBI Gene:72930Re-query CCDS DB by CCDS ID:29216.1Re-query CCDS DB by GeneID:72930See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29216.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025377.13 ENSMUSP00000025377.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025377.13Link to Ensembl Protein Viewer:ENSMUSP00000025377.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025377Re-query CCDS DB by Protein ID:ENSMUSP00000025377
Original member NCBI NM_028392.3 NP_082668.1 Updated not alive Link to Nucleotide Sequence:NM_028392.3Link to Protein Sequence:NP_082668.1Re-query CCDS DB by Nucleotide ID:NM_028392Re-query CCDS DB by Protein ID:NP_082668
Current member NCBI NM_028392.4 NP_082668.1 Accepted alive Link to Nucleotide Sequence:NM_028392.4Link to Protein Sequence:NP_082668.1Re-query CCDS DB by Nucleotide ID:NM_028392Re-query CCDS DB by Protein ID:NP_082668Link to BLAST:NP_082668.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082668.1 446 Q6ZWR4-2 446 100% 0 0

Chromosomal Locations for CCDS 29216.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 42645728 42646007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42648674 42648765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42663110 42663279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42688302 42688466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42701470 42701647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42731787 42731899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42737901 42738066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42741096 42741193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43059162 43059240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGAAATGCTTCTCTCGTTACCTGCCTTATATCTTCAGACCTCCAAACACCATCCTCTCTTCCAGCTGCC
ATACTGAAGCTGACATTATCTCTACGGTAGAATTCAACCACACGGGAGAGTTACTAGCGACGGGGGACAA
GGGGGGTCGGGTCGTAATATTTCAGCGAGAACAGGAGAGTAAAAACCAGGTTCATCGTAGGGGTGAATAC
AATGTTTACAGCACATTCCAGAGCCATGAACCCGAGTTCGATTACCTGAAAAGTTTAGAAATAGAAGAAA
AAATCAATAAGATAAGATGGCTCCCTCAACAAAACGCAGCTTACTTTCTTCTGTCTACCAACGATAAAAC
TGTGAAGCTGTGGAAAGTCAGTGAGCGGGATAAGAGGCCAGAAGGCTACAACCTGAAAGATGAGGAGGGC
CGGCTCCGGGATCCTGCCACCATCACAACCCTGCGGGTGCCTGTCCTGAGACCCATGGACCTGATGGTGG
AGGCCACCCCACGAAGAGTGTTTGCCAATGCGCACACGTACCACATCAACTCTATATCTGTCAACAGCGA
CTATGAGACCTACATGTCTGCTGATGACCTGAGGATTAATCTGTGGAACTTTGAGATAACCAATCAGAGT
TTTAATATCGTGGACATCAAGCCAGCCAACATGGAGGAGCTCACAGAGGTGATCACTGCAGCTGAGTTCC
ACCCCCACCACTGCAACACCTTCGTATACAGCAGCAGCAAGGGGACAATCCGGCTGTGTGACATGCGTGC
ATCTGCGCTGTGTGACAGGCACACCAAGTTTTTTGAAGAACCGGAAGATCCAAGCAACAGATCGTTTTTC
TCTGAAATCATCTCTTCAATTTCGGATGTGAAATTCAGCCACAGTGGGAGGTATATCATGACCAGAGACT
ATCTGACCGTGAAAGTCTGGGACCTCAACATGGAAAATCGCCCCATTGAGACATACCAGGTTCATGACTA
CCTCCGCAGCAAGTTGTGCTCCCTCTATGAAAACGACTGCATTTTTGATAAATTTGAGTGTGTATGGAAT
GGGTCAGACAGCGTCATCATGACAGGCTCCTACAATAACTTCTTCAGGATGTTCGACCGAAACACCAAGC
GTGATGTGACCCTTGAGGCCTCAAGGGAAAACAGCAAACCCCGGGCTATCCTCAAACCCCGAAAAGTGTG
CGTCGGGGGCAAGCGAAGAAAAGATGAGATCAGTGTTGACAGTCTGGACTTTAGCAAAAAGATCTTGCAT
ACAGCTTGGCATCCTTCAGAAAACATTATAGCAGTGGCGGCTACGAATAACTTATATATATTCCAAGACA
AGGTTAACTAG

Translation (446 aa):
MKCFSRYLPYIFRPPNTILSSSCHTEADIISTVEFNHTGELLATGDKGGRVVIFQREQESKNQVHRRGEY
NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKVSERDKRPEGYNLKDEEG
RLRDPATITTLRVPVLRPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQS
FNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNRSFF
SEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWN
GSDSVIMTGSYNNFFRMFDRNTKRDVTLEASRENSKPRAILKPRKVCVGGKRRKDEISVDSLDFSKKILH
TAWHPSENIIAVAATNNLYIFQDKVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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