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Report for CCDS2929.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2929.1 Public Homo sapiens 3 RIOX2 24 110 108 CCDS HistoryNCBI Gene:84864Re-query CCDS DB by CCDS ID:2929.1Re-query CCDS DB by GeneID:84864See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2929.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360258.8 ENSP00000353395.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360258.8Link to Ensembl Protein Viewer:ENSP00000353395.4Re-query CCDS DB by Nucleotide ID:ENST00000360258Re-query CCDS DB by Protein ID:ENSP00000353395
Original member Current member NCBI NM_001261829.2 NP_001248758.1 Accepted alive Link to Nucleotide Sequence:NM_001261829.2Link to Protein Sequence:NP_001248758.1Re-query CCDS DB by Nucleotide ID:NM_001261829Re-query CCDS DB by Protein ID:NP_001248758Link to BLAST:NP_001248758.1
Original member Current member NCBI NM_032778.6 NP_116167.3 Accepted alive Link to Nucleotide Sequence:NM_032778.6Link to Protein Sequence:NP_116167.3Re-query CCDS DB by Nucleotide ID:NM_032778Re-query CCDS DB by Protein ID:NP_116167Link to BLAST:NP_116167.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001248758.1 464 Q8IUF8-4 464 100% 0 0
NP_116167.3 464 Q8IUF8-4 464 100% 0 0

Chromosomal Locations for CCDS 2929.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 97945184 97945342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97945798 97945887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97947361 97947449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97949844 97950012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97950786 97950888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97954392 97954495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97959051 97959179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97961589 97961708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97967162 97967593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGCCAAAGAAAGCAAAGCCTACAGGGAGTGGGAAGGAAGAGGGGCCGGCTCCCTGTAAGCAGATGAAGT
TAGAAGCAGCTGGGGGGCCTTCAGCTTTAAACTTTGACAGTCCCAGTAGTCTCTTTGAAAGTTTAATCTC
GCCCATCAAGACAGAGACTTTTTTCAAGGAATTCTGGGAGCAGAAGCCCCTTCTCATTCAGAGAGATGAC
CCTGCACTGGCCACATACTATGGGTCCCTGTTCAAGCTAACAGATCTGAAGAGTCTGTGCAGCCGGGGGA
TGTACTATGGAAGAGATGTGAATGTCTGCCGGTGTGTCAATGGGAAGAAGAAGGTTTTAAATAAAGATGG
CAAAGCACACTTTCTTCAGCTGAGAAAAGATTTTGATCAGAAAAGGGCAACGATTCAGTTTCACCAACCT
CAGAGATTTAAGGATGAGCTTTGGAGGATCCAGGAGAAGCTGGAATGTTACTTTGGCTCCTTGGTTGGCT
CGAATGTGTACATAACTCCCGCAGGATCTCAGGGCCTGCCGCCCCATTATGATGATGTCGAGGTTTTCAT
CCTGCAGCTGGAGGGAGAGAAACACTGGCGCCTCTACCACCCCACTGTGCCCCTGGCACGAGAGTACAGC
GTGGAGGCCGAGGAAAGGATCGGCAGGCCGGTGCATGAGTTTATGCTGAAGCCGGGTGATTTGTTGTACT
TTCCCAGAGGAACCATTCATCAAGCGGACACTCCTGCGGGGCTGGCCCACTCTACTCACGTGACCATCAG
CACCTACCAGAACAATTCATGGGGAGATTTCCTTTTGGATACCATCTCGGGGCTTGTATTTGATACTGCA
AAGGAAGACGTGGAGTTACGGACCGGCATACCCCGGCAGCTGCTCCTGGTGGAATCCACAACTGTTGCTA
CAAGACGATTAAGTGGCTTCCTGAGGACACTTGCAGACCGGCTGGAGGGCACCAAAGAACTGCTTTCCTC
AGACATGAAGAAGGATTTTATTATGCACAGACTCCCCCCTTACTCTGCGGGAGATGGGGCAGAGCTGTCA
ACACCAGGTGGAAAGTTACCGAGGCTGGACAGTGTAGTGAGACTGCAGTTTAAAGACCACATTGTCCTCA
CAGTACTGCCGGATCAAGATCAATCTGATGAAGCTCAAGAAAAGATGGTGTACATCTATCATTCCTTAAA
GAATAGTAGAGAGACACACATGATGGGAAATGAGGAGGAAACAGAGTTTCATGGACTTCGCTTCCCTTTG
TCACATTTGGATGCACTGAAGCAAATTTGGAATAGTCCAGCTATTTCTGTCAAGGACCTGAAACTTACTA
CAGATGAGGAAAAGGAAAGCCTGGTATTATCCCTCTGGACAGAATGTTTAATTCAAGTAGTCTAG

Translation (464 aa):
MPKKAKPTGSGKEEGPAPCKQMKLEAAGGPSALNFDSPSSLFESLISPIKTETFFKEFWEQKPLLIQRDD
PALATYYGSLFKLTDLKSLCSRGMYYGRDVNVCRCVNGKKKVLNKDGKAHFLQLRKDFDQKRATIQFHQP
QRFKDELWRIQEKLECYFGSLVGSNVYITPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYS
VEAEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPAGLAHSTHVTISTYQNNSWGDFLLDTISGLVFDTA
KEDVELRTGIPRQLLLVESTTVATRRLSGFLRTLADRLEGTKELLSSDMKKDFIMHRLPPYSAGDGAELS
TPGGKLPRLDSVVRLQFKDHIVLTVLPDQDQSDEAQEKMVYIYHSLKNSRETHMMGNEEETEFHGLRFPL
SHLDALKQIWNSPAISVKDLKLTTDEEKESLVLSLWTECLIQVV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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