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Report for CCDS293.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
293.1 Public Homo sapiens 1 KDF1 24 110 108 CCDS HistoryNCBI Gene:126695Re-query CCDS DB by CCDS ID:293.1Re-query CCDS DB by GeneID:126695See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 293.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320567.6 ENSP00000319179.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000320567.6Link to Ensembl Protein Viewer:ENSP00000319179.5Re-query CCDS DB by Nucleotide ID:ENST00000320567Re-query CCDS DB by Protein ID:ENSP00000319179
Original member Current member NCBI NM_152365.3 NP_689578.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152365.3Link to Protein Sequence:NP_689578.2Re-query CCDS DB by Nucleotide ID:NM_152365Re-query CCDS DB by Protein ID:NP_689578Link to BLAST:NP_689578.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689578.2 398 Q8NAX2 398 100% 0 0

Chromosomal Locations for CCDS 293.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 26950069 26950151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26950682 26950756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26951342 26952380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGCCCCGCCCTGGACACCCCCGCCCAGCATCTGGGCCTCCACGCTTGGGACCGTGGGAGCGGCCAACAG
AGCTATGTCTGGAGACATATGATAAACCACCTCAGCCCCCACCAAGCCGCCGCACCCGTAGACCAGACCC
CAAGGACCCTGGCCACCATGGGCCAGAGAGCATTACCTTCATCTCTGGCTCTGCTGAGCCGGCCCTTGAG
TCCCCCACCTGCTGCCTGCTCTGGCGACCCTGGGTGTGGGAGTGGTGCCGGGCTGCCTTCTGCTTCCGCC
GCTGCCGGGATTGCCTCCAGCGCTGTGGAGCCTGTGTGCGGGGATGCAGCCCCTGCCTGTCTACTGAGGA
CTCCACTGAGGGGACTGCTGAAGCCAACTGGGCCAAGGAGCACAATGGAGTGCCCCCCAGCCCTGATCGT
GCACCCCCCAGCCGGCGGGATGGCCAGCGGCTCAAGTCAACCATGGGCAGCAGCTTCAGCTACCCCGATG
TTAAGCTCAAAGGCATCCCTGTGTATCCCTACCCGAGGGCCACCTCCCCAGCCCCTGATGCGGACTCCTG
CTGCAAGGAGCCACTGGCCGATCCCCCACCCATGCGACACAGCCTGCCCAGCACCTTTGCCAGTAGTCCT
CGTGGCTCCGAGGAGTACTATTCTTTCCATGAGTCGGACCTGGACCTGCCGGAGATGGGCAGTGGCTCCA
TGTCGAGCCGAGAAATTGATGTGCTCATCTTCAAGAAGCTGACAGAGCTGTTCAGCGTACACCAGATCGA
TGAGCTGGCCAAGTGCACATCAGACACTGTGTTCCTGGAGAAGACCAGTAAGATCTCGGACCTTATCAGC
AGCATCACGCAGGACTACCACCTGGATGAGCAGGATGCTGAGGGCCGCCTGGTACGCGGCATCATTCGCA
TTAGTACCCGAAAGAGCCGTGCTCGCCCACAGACCTCGGAGGGTCGTTCAACTCGGGCTGCTGCCCCAAC
CGCTGCTGCCCCTGACAGTGGCCATGAGACCATGGTGGGCTCAGGTCTCAGCCAGGATGAGCTGACAGTG
CAGATCTCCCAGGAGACGACTGCAGATGCCATCGCCCGGAAGCTGAGGCCTTATGGAGCTCCAGGGTACC
CAGCAAGCCATGACTCATCCTTCCAGGGCACCGACACAGACTCGTCGGGGGCACCCTTGCTCCAGGTGTA
CTGCTAA

Translation (398 aa):
MPRPGHPRPASGPPRLGPWERPTELCLETYDKPPQPPPSRRTRRPDPKDPGHHGPESITFISGSAEPALE
SPTCCLLWRPWVWEWCRAAFCFRRCRDCLQRCGACVRGCSPCLSTEDSTEGTAEANWAKEHNGVPPSPDR
APPSRRDGQRLKSTMGSSFSYPDVKLKGIPVYPYPRATSPAPDADSCCKEPLADPPPMRHSLPSTFASSP
RGSEEYYSFHESDLDLPEMGSGSMSSREIDVLIFKKLTELFSVHQIDELAKCTSDTVFLEKTSKISDLIS
SITQDYHLDEQDAEGRLVRGIIRISTRKSRARPQTSEGRSTRAAAPTAAAPDSGHETMVGSGLSQDELTV
QISQETTADAIARKLRPYGAPGYPASHDSSFQGTDTDSSGAPLLQVYC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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