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Report for CCDS29365.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29365.1 Public Mus musculus 18 Txnl4a 23 108 98 CCDS HistoryNCBI Gene:27366Re-query CCDS DB by CCDS ID:29365.1Re-query CCDS DB by GeneID:27366See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29365.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000145963.8 ENSMUSP00000115320.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000145963.8Link to Ensembl Protein Viewer:ENSMUSP00000115320.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000145963Re-query CCDS DB by Protein ID:ENSMUSP00000115320
Original member NCBI NM_025299.3 NP_079575.1 Updated not alive Link to Nucleotide Sequence:NM_025299.3Link to Protein Sequence:NP_079575.1Re-query CCDS DB by Nucleotide ID:NM_025299Re-query CCDS DB by Protein ID:NP_079575
Current member NCBI NM_025299.4 NP_079575.1 Accepted alive Link to Nucleotide Sequence:NM_025299.4Link to Protein Sequence:NP_079575.1Re-query CCDS DB by Nucleotide ID:NM_025299Re-query CCDS DB by Protein ID:NP_079575Link to BLAST:NP_079575.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079575.1 142 P83877 142 100% 0 0

Chromosomal Locations for CCDS 29365.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 80207191 80207343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80218704 80218807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80222179 80222350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGTCGTACATGCTTCCGCATCTGCACAATGGCTGGCAGGTAGACCAGGCCATCCTTTCGGAGGAGGACC
GCGTGGTCGTCATTCGTTTCGGACACGACTGGGACCCCACTTGCATGAAGATGGACGAGGTTCTGTACAG
CATCGCCGAAAAGGTTAAAAATTTTGCAGTTATTTATCTTGTGGATATTACAGAAGTGCCTGACTTCAAC
AAGATGTACGAGCTGTATGACCCCTGCACTGTCATGTTCTTCTTCAGAAACAAACATATCATGATTGATT
TGGGCACTGGCAACAACAACAAGATCAACTGGGCCATGGAAGACAAGCAAGAAATGGTTGACATCATAGA
GACCGTGTACCGTGGCGCCCGCAAAGGCCGGGGTCTGGTGGTGTCTCCCAAGGACTATTCTACCAAGTAC
AGATACTGA

Translation (142 aa):
MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFN
KMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKY
RY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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