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Report for CCDS29383.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29383.1 Public Mus musculus 18 Cndp2 23 108 98 CCDS HistoryNCBI Gene:66054Re-query CCDS DB by CCDS ID:29383.1Re-query CCDS DB by GeneID:66054See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29383.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025546.16 ENSMUSP00000025546.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025546.16Link to Ensembl Protein Viewer:ENSMUSP00000025546.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000025546Re-query CCDS DB by Protein ID:ENSMUSP00000025546
Original member Current member EBI ENSMUST00000168419.2 ENSMUSP00000128696.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168419.2Link to Ensembl Protein Viewer:ENSMUSP00000128696.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168419Re-query CCDS DB by Protein ID:ENSMUSP00000128696
Original member Current member NCBI NM_001289531.1 NP_001276460.1 Accepted alive Link to Nucleotide Sequence:NM_001289531.1Link to Protein Sequence:NP_001276460.1Re-query CCDS DB by Nucleotide ID:NM_001289531Re-query CCDS DB by Protein ID:NP_001276460Link to BLAST:NP_001276460.1
Original member Current member NCBI NM_023149.3 NP_075638.2 Accepted alive Link to Nucleotide Sequence:NM_023149.3Link to Protein Sequence:NP_075638.2Re-query CCDS DB by Nucleotide ID:NM_023149Re-query CCDS DB by Protein ID:NP_075638Link to BLAST:NP_075638.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276460.1 475 Q9D1A2 475 100% 0 0
NP_075638.2 475 Q9D1A2 475 100% 0 0

Chromosomal Locations for CCDS 29383.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 84668031 84668100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84668538 84668685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84668931 84669072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84669797 84669961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84670753 84670913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84672074 84672158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84674977 84675177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84677319 84677407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84678708 84678870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84680935 84681078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84681838 84681897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGTCAGCCCTCAAAGCTGTCTTCCAGTATATCGATGAAAACCAGGACCGCTACGTCAAGAAACTTGCAG
AATGGGTGGCCATCCAGAGCGTGTCCGCATGGCCGGAGAAGAGAGGAGAGATCAGAAGGATGATGGAGGT
GGCAGCTGCCGATGTCCAGAGGCTGGGGGGCTCCGTGGAACTGGTGGATATTGGGAAGCAGAAGCTCCCA
GATGGCTCGGAGATACCACTTCCTCCCATTCTGCTGGGCAAGCTAGGCAGCGACCCCCAGAAGAAAACCG
TGTGCATTTACGGGCACCTGGACGTGCAGCCTGCGGCCCTGGAGGACGGGTGGGACAGCGAGCCCTTCAC
CTTGGTGGAGCGGGAAGGCAAGCTGTATGGGAGAGGCTCCACGGACGATAAGGGGCCAGTGGCCGGGTGG
ATGAATGCCCTGGAAGCCTATCAGAAGACTGGTCAGGAGATCCCAGTCAACCTGCGGTTCTGCCTGGAAG
GCATGGAGGAGTCTGGCTCCGAAGGCCTGGATGAGCTCATTTTTGCCCAGAAAGACAAGTTCTTCAAAGA
TGTGGACTATGTGTGCATTTCAGACAATTACTGGCTGGGGAAGAATAAGCCGTGTATCACGTACGGCCTC
AGAGGCATCTGTTACTTCTTCATCGAGGTGGAATGCAGTGACAAAGACCTCCATTCTGGGGTATATGGAG
GCTCAGTGCACGAGGCCATGACGGATCTCATTTCACTGATGGGCTGCCTGGTAGACAAGAAGGGGAAGAT
CCTCATCCCGGGCATCAACGATGCCGTGGCGCCTGTGACGGATGAGGAGCATGCGCTCTACGACCACATT
GACTTCGATATGGAAGAGTTCGCCAAGGACGTGGGGGCTGAGACCCTTCTGCACAGCTGCAAGAAAGACA
TCCTGATGCACAGATGGCGATACCCGTCCCTCTCCCTGCATGGGATCGAAGGGGCCTTCTCCGGTTCAGG
GGCCAAGACTGTGATCCCCAGAAAGGTGGTCGGCAAGTTCTCCATCAGGCTCGTGCCAGACATGATACCG
GAAGTTGTTAGCGAGCAAGTTTCAAGCTACTTGTCAAAAAAATTTGCTGAACTGCAGAGCCCCAACAAGT
TCAAGGTGTACATGGGCCACGGCGGGAAGCCCTGGGTGTCTGACTTCAACCATCCTCATTACCAGGCGGG
GAGAAGAGCCCTGAAGACAGTGTTTGGTGTTGAGCCTGACTTGACCAGAGAAGGTGGCAGTATTCCTGTG
ACCTTGACCTTTCAAGAGGCCACAGGCAAAAATGTCATGCTATTGCCAGTGGGGTCAGCAGATGACGGTG
CCCACTCGCAGAATGAGAAGCTCAACAGGCTCAACTACATAGAAGGAACCAAAATGCTGGCTGCATATCT
GTATGAGGTGTCTCAGCTGAAGAACTGA

Translation (475 aa):
MSALKAVFQYIDENQDRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGSVELVDIGKQKLP
DGSEIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVEREGKLYGRGSTDDKGPVAGW
MNALEAYQKTGQEIPVNLRFCLEGMEESGSEGLDELIFAQKDKFFKDVDYVCISDNYWLGKNKPCITYGL
RGICYFFIEVECSDKDLHSGVYGGSVHEAMTDLISLMGCLVDKKGKILIPGINDAVAPVTDEEHALYDHI
DFDMEEFAKDVGAETLLHSCKKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVVGKFSIRLVPDMIP
EVVSEQVSSYLSKKFAELQSPNKFKVYMGHGGKPWVSDFNHPHYQAGRRALKTVFGVEPDLTREGGSIPV
TLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRLNYIEGTKMLAAYLYEVSQLKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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