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Report for CCDS29458.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29458.1 Public Mus musculus 19 Banf1 23 108 98 CCDS HistoryNCBI Gene:23825Re-query CCDS DB by CCDS ID:29458.1Re-query CCDS DB by GeneID:23825See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29458.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025762.15 ENSMUSP00000025762.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025762.15Link to Ensembl Protein Viewer:ENSMUSP00000025762.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025762Re-query CCDS DB by Protein ID:ENSMUSP00000025762
Original member Current member EBI ENSMUST00000170010.2 ENSMUSP00000126202.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170010.2Link to Ensembl Protein Viewer:ENSMUSP00000126202.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170010Re-query CCDS DB by Protein ID:ENSMUSP00000126202
Original member Current member EBI ENSMUST00000237167.1 ENSMUSP00000158117.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237167.1Link to Ensembl Protein Viewer:ENSMUSP00000158117.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237167Re-query CCDS DB by Protein ID:ENSMUSP00000158117
Original member Current member NCBI NM_001038231.2 NP_001033320.1 Accepted alive Link to Nucleotide Sequence:NM_001038231.2Link to Protein Sequence:NP_001033320.1Re-query CCDS DB by Nucleotide ID:NM_001038231Re-query CCDS DB by Protein ID:NP_001033320Link to BLAST:NP_001033320.1
Original member Current member NCBI NM_001286608.1 NP_001273537.1 Accepted alive Link to Nucleotide Sequence:NM_001286608.1Link to Protein Sequence:NP_001273537.1Re-query CCDS DB by Nucleotide ID:NM_001286608Re-query CCDS DB by Protein ID:NP_001273537Link to BLAST:NP_001273537.1
Original member Current member NCBI NM_011793.3 NP_035923.1 Accepted alive Link to Nucleotide Sequence:NM_011793.3Link to Protein Sequence:NP_035923.1Re-query CCDS DB by Nucleotide ID:NM_011793Re-query CCDS DB by Protein ID:NP_035923Link to BLAST:NP_035923.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033320.1 89 O54962 89 100% 0 0
NP_001273537.1 89 O54962 89 100% 0 0
NP_035923.1 89 O54962 89 100% 0 0

Chromosomal Locations for CCDS 29458.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5365012 5365158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5365818 5365940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (270 nt):
ATGACAACCTCCCAAAAGCACCGAGACTTCGTGGCAGAGCCCATGGGGGAAAAGCCAGTGGGGAGCCTGG
CCGGGATTGGTGACGTCCTGAGCAAGAGGCTGGAGGAAAGGGGCTTTGACAAGGCTTATGTGGTCCTTGG
CCAGTTTCTGGTGCTAAAGAAAGATGAAGACCTCTTCCGAGAATGGCTGAAGGATACATGTGGTGCCAAT
GCCAAGCAGTCCCGGGACTGCTTTGGGTGCCTTCGAGAATGGTGTGATGCCTTCTTGTAG

Translation (89 aa):
MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLSKRLEERGFDKAYVVLGQFLVLKKDEDLFREWLKDTCGAN
AKQSRDCFGCLREWCDAFL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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