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Report for CCDS29608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29608.1 Public Mus musculus 19 Oosp3 23 108 98 CCDS HistoryNCBI Gene:225923Re-query CCDS DB by CCDS ID:29608.1Re-query CCDS DB by GeneID:225923See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29608.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069760.12 ENSMUSP00000064913.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069760.12Link to Ensembl Protein Viewer:ENSMUSP00000064913.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000069760Re-query CCDS DB by Protein ID:ENSMUSP00000064913
Original member Current member NCBI NM_001033283.2 NP_001028455.2 Accepted alive Link to Nucleotide Sequence:NM_001033283.2Link to Protein Sequence:NP_001028455.2Re-query CCDS DB by Nucleotide ID:NM_001033283Re-query CCDS DB by Protein ID:NP_001028455Link to BLAST:NP_001028455.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028455.2 195 G5E8D7 195 100% 0 0

Chromosomal Locations for CCDS 29608.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11697099 11697171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11699352 11699530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11700914 11701011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11703876 11703932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11705377 11705488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11711615 11711683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (588 nt):
ATGAAGGCCTTCGTTGCTTCAGGATTGCTGCTGCTCATATTTGGGATGTGGAGATGTTCTGGGATAGAGC
CAGTATCCATGGAATGTGATTACTTTACATTCCGTGTTATAGCTAAAAGGGCACTGTTTTATCCAGATGA
TCTCATTGGCCCTGATGAATTATTATTAGGGGCAAGCTGCCCAGTAACTTCCATAAGGCCAGATGAACTT
GAGTTCTATTATGATATCCATTCCTGTGGGACTTTCATACAGCACGCATTTGATGGAACTATTGTTAATA
CCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCAG
AATTTCGCAAGATGAACTTGATAACAAGCAATCATCTGATGAGTGCGTTGGGGAAAGTGAATCTATTGAT
GTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTT
GTGGCCATTTCCATTTCCCAAATAACTGGTTAATACCTTATCATGGGTGGAAGGATGAGTCCTTTCAAAG
ACTTTGGCCATCATTATTTCACCGTTGA

Translation (195 aa):
MKAFVASGLLLLIFGMWRCSGIEPVSMECDYFTFRVIAKRALFYPDDLIGPDELLLGASCPVTSIRPDEL
EFYYDIHSCGTFIQHAFDGTIVNTWLTYMPRNISIYAELQLQCVIPRISQDELDNKQSSDECVGESESID
VGNLDFHPPPQCWFLVLKRYCIICGHFHFPNNWLIPYHGWKDESFQRLWPSLFHR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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