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Report for CCDS2983.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2983.1 Public Homo sapiens 3 IGSF11 24 110 108 CCDS HistoryNCBI Gene:152404Re-query CCDS DB by CCDS ID:2983.1Re-query CCDS DB by GeneID:152404See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2983.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354673.6 ENSP00000346700.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354673.6Link to Ensembl Protein Viewer:ENSP00000346700.2Re-query CCDS DB by Nucleotide ID:ENST00000354673Re-query CCDS DB by Protein ID:ENSP00000346700
Original member Current member EBI ENST00000425327.6 ENSP00000406092.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000425327.6Link to Ensembl Protein Viewer:ENSP00000406092.2Re-query CCDS DB by Nucleotide ID:ENST00000425327Re-query CCDS DB by Protein ID:ENSP00000406092
Original member Current member NCBI NM_001353320.2 NP_001340249.1 Accepted alive Link to Nucleotide Sequence:NM_001353320.2Link to Protein Sequence:NP_001340249.1Re-query CCDS DB by Nucleotide ID:NM_001353320Re-query CCDS DB by Protein ID:NP_001340249Link to BLAST:NP_001340249.1
Original member Current member NCBI NM_152538.4 NP_689751.2 Accepted alive Link to Nucleotide Sequence:NM_152538.4Link to Protein Sequence:NP_689751.2Re-query CCDS DB by Nucleotide ID:NM_152538Re-query CCDS DB by Protein ID:NP_689751Link to BLAST:NP_689751.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001340249.1 430 Q5DX21-2 430 100% 0 0
NP_689751.2 430 Q5DX21-2 430 100% 0 0

Chromosomal Locations for CCDS 2983.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 118902520 118902961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118904648 118904798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118905596 118905718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118926101 118926256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118928509 118928716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118930112 118930275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119105144 119105192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGTCTCTGGTGGAACTTTTGCTCTGGTGGAACTGCTTTTCTAGAACTGGTGTTGCAGCATCCCTGGAAG
TGTCAGAGAGCCCTGGGAGTATCCAGGTGGCCCGGGGTCAGCCAGCAGTCCTGCCCTGCACTTTCACTAC
CAGCGCTGCCCTCATTAACCTCAATGTCATTTGGATGGTCACTCCTCTCTCCAATGCCAACCAACCTGAA
CAGGTCATCCTGTATCAGGGTGGACAGATGTTTGATGGTGCCCCCCGGTTCCACGGTAGGGTAGGATTTA
CAGGCACCATGCCAGCTACCAATGTCTCTATCTTCATTAATAACACTCAGTTATCAGACACTGGCACCTA
CCAGTGCCTGGTCAACAACCTTCCAGACATAGGGGGCAGGAACATTGGGGTCACCGGTCTCACAGTGTTA
GTTCCCCCTTCTGCCCCACACTGCCAAATCCAAGGATCCCAGGATATTGGCAGCGATGTCATCCTGCTCT
GTAGCTCAGAGGAAGGCATTCCTCGACCAACTTACCTTTGGGAGAAGTTAGACAATACCCTCAAACTACC
TCCAACAGCTACTCAGGACCAGGTCCAGGGAACAGTCACCATCCGGAACATCAGTGCCCTGTCTTCAGGT
TTGTACCAGTGCGTGGCTTCTAATGCTATTGGAACCAGCACCTGTCTTCTGGATCTCCAGGTTATTTCAC
CCCAGCCCAGGAACATTGGACTAATAGCTGGAGCCATTGGCACTGGTGCAGTTATTATCATTTTTTGCAT
TGCACTAATTTTAGGGGCATTCTTTTACTGGAGAAGCAAAAATAAAGAGGAGGAAGAAGAAGAAATTCCT
AATGAAATAAGAGAGGATGATCTTCCACCCAAGTGTTCTTCTGCCAAAGCATTTCACACTGAGATTTCCT
CCTCGGACAACAACACACTAACCTCTTCCAATGCCTACAACAGTCGATACTGGAGCAACAATCCAAAAGT
TCATAGAAACACAGAGTCAGTCAGCCACTTCAGTGACTTGGGCCAATCTTTCTCTTTCCACTCAGGCAAT
GCCAACATACCATCCATTTATGCTAATGGGACCCATCTGGTCCCGGGTCAACATAAGACTCTGGTAGTGA
CAGCCAACAGAGGGTCATCACCACAGGTGATGTCCAGGAGCAATGGCTCAGTCAGTAGGAAGCCTCGGCC
TCCACACACTCATTCCTACACCATCAGCCACGCAACACTGGAACGAATTGGTGCAGTACCTGTCATGGTA
CCAGCCCAGAGTCGGGCCGGGTCCTTGGTATAG

Translation (430 aa):
MSLVELLLWWNCFSRTGVAASLEVSESPGSIQVARGQPAVLPCTFTTSAALINLNVIWMVTPLSNANQPE
QVILYQGGQMFDGAPRFHGRVGFTGTMPATNVSIFINNTQLSDTGTYQCLVNNLPDIGGRNIGVTGLTVL
VPPSAPHCQIQGSQDIGSDVILLCSSEEGIPRPTYLWEKLDNTLKLPPTATQDQVQGTVTIRNISALSSG
LYQCVASNAIGTSTCLLDLQVISPQPRNIGLIAGAIGTGAVIIIFCIALILGAFFYWRSKNKEEEEEEIP
NEIREDDLPPKCSSAKAFHTEISSSDNNTLTSSNAYNSRYWSNNPKVHRNTESVSHFSDLGQSFSFHSGN
ANIPSIYANGTHLVPGQHKTLVVTANRGSSPQVMSRSNGSVSRKPRPPHTHSYTISHATLERIGAVPVMV
PAQSRAGSLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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