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Report for CCDS29994.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29994.1 Public Mus musculus X Ftsj1 23 108 98 CCDS HistoryNCBI Gene:54632Re-query CCDS DB by CCDS ID:29994.1Re-query CCDS DB by GeneID:54632See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29994.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033513.9 ENSMUSP00000033513.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033513.9Link to Ensembl Protein Viewer:ENSMUSP00000033513.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000033513Re-query CCDS DB by Protein ID:ENSMUSP00000033513
Original member NCBI NM_133991.2 NP_598752.2 Updated not alive Link to Nucleotide Sequence:NM_133991.2Link to Protein Sequence:NP_598752.2Re-query CCDS DB by Nucleotide ID:NM_133991Re-query CCDS DB by Protein ID:NP_598752
Current member NCBI NM_133991.3 NP_598752.2 Accepted alive Link to Nucleotide Sequence:NM_133991.3Link to Protein Sequence:NP_598752.2Re-query CCDS DB by Nucleotide ID:NM_133991Re-query CCDS DB by Protein ID:NP_598752Link to BLAST:NP_598752.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598752.2 324 Q8CBC7-1 324 100% 0 0

Chromosomal Locations for CCDS 29994.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 8245075 8245101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8245284 8245472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8245552 8245655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8246336 8246419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8246532 8246634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8246727 8246780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8246869 8246921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8248979 8249057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8250396 8250486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8250569 8250638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8250880 8251000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGGGACGGACATCTAAGGATAAACGGGATGTCTACTACCGCCTGGCCAAGGAGAATGGCTGGCGGGCCC
GAAGCGCTTTCAAGCTCCTGCAACTGGATGAGGAATTCCAACTCTTCAAAGGTGTGAAGCGAGCGGTTGA
CTTGTGTGCAGCCCCAGGCAGCTGGAGCCAGGTGCTGAGCCAGAAGGTTGGGGGCCAGGGTTCTGGTCAG
GTGGTGGCCGTGGACTTACAGGCTATGGCTCCACTGCCAGGTGTGATACAGATACAGGGCGACATCACTC
AGCTTTCCACTGCCAAGGAGATCATCCAGCACTTTGAAGGCTGCCCTGCTGACCTAGTAGTGTGTGACGG
GGCTCCTGATGTCACTGGTCTCCATGATGTGGATGAGTACATGCAGGCCCAGCTTCTGCTAGCTGCTCTC
AACATCGCTACTCATGTCTTGAAGCTAGGGGGCTGCTTCGTGGCCAAGATATTCCGAGGCCGGGATGTGA
CCCTGCTCTACAGCCAACTACGTATCTTCTTCTCCAGTGTGCTCTGCGCTAAGCCCAAGAGCAGCCGGAA
CTCTAGCATTGAGGCCTTTGCTGTGTGTCAGGGTTATGACCCTCCTGAGGGCTTCATTCCAGACCTGACC
AGACCCCTGCTGAACCACTCATATGATACAGATTTCAACCAGTTGGATGGTCCCACCCGTGTTATTGTGC
CCTTTGTGGCCTGTGGGGACCTCAGCGCCTACGATTCGGACCGCACTTACTCTCTGGATCTAGACGGTGG
CTCTGAGTACAAATATACTCCACCCACACAGCCCCCCATCGCACCCCCATACCAAGAGGCCTGCAGGTTG
AAGAAGAATGGACAGCTGGCCAAGGAACTCCTCCCCCAAGAATGCTCCATCAACAGTGTGGACAAGTTGC
CCCAGCCTCTGGCTATCCATACCCTGCTAGACCCCAAGGTGGAAGACAATGAAATTCATTGTTGA

Translation (324 aa):
MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDEEFQLFKGVKRAVDLCAAPGSWSQVLSQKVGGQGSGQ
VVAVDLQAMAPLPGVIQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAAL
NIATHVLKLGGCFVAKIFRGRDVTLLYSQLRIFFSSVLCAKPKSSRNSSIEAFAVCQGYDPPEGFIPDLT
RPLLNHSYDTDFNQLDGPTRVIVPFVACGDLSAYDSDRTYSLDLDGGSEYKYTPPTQPPIAPPYQEACRL
KKNGQLAKELLPQECSINSVDKLPQPLAIHTLLDPKVEDNEIHC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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