NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30086.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30086.1 Public Mus musculus X Rhox11 23 108 98 CCDS HistoryNCBI Gene:194738Re-query CCDS DB by CCDS ID:30086.1Re-query CCDS DB by GeneID:194738See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30086.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054147.10 ENSMUSP00000052929.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054147.10Link to Ensembl Protein Viewer:ENSMUSP00000052929.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000054147Re-query CCDS DB by Protein ID:ENSMUSP00000052929
Original member Current member NCBI NM_198598.2 NP_941000.1 Accepted alive Link to Nucleotide Sequence:NM_198598.2Link to Protein Sequence:NP_941000.1Re-query CCDS DB by Nucleotide ID:NM_198598Re-query CCDS DB by Protein ID:NP_941000Link to BLAST:NP_941000.1

Chromosomal Locations for CCDS 30086.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 38076620 38076835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38080415 38080460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38084619 38084977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGTCCCGTAAGTACTTCTACTTCGACTACGACTACTATGGGATGAGCTTCTGTGAGGAAGAAATCACGA
CTGAACCCGAGGAAAAGGTGGCCTACACATCAAACAGTGGCGGCTTCGCCGATGAAGTAACAGGCATCCC
GAAAGAGGGCCACCAGAGCTCTATAGGCGAGCATAGCTGTGTCATGCCTAACACTCAGGACACTGGGCGA
GAAGAGCCAGAGGAGACCAGTAAGGTGGCCGAGACCAGTGAGCAGTCGTTATTCAGGATTCCTCGGAAAG
CATACAGATTTACACCTGGACAGCTGTGGGAACTGCAAGCAGTGTTCGTAGAAAATCAGTATCCAGATGC
CCTCAAAAGAAAAGAGCTGGCAGGGCTCCTGAATGTGGATGAACAGAAAATAAAGGATTGGTTCAACAAT
AAGAGAGCTAAATATAGGAAGATTCAGAGGGAAATACTGGGGGGCAAGAACATCACTCCTACCCAGGAAG
AACTTCGCATGAAGACTTTGGTGGAATCCAAGAAAATCATCATTTTCCAGGAGCAAGAGGGGGATGGGCT
TTTCTGGGAACACCAGAACATTGACACCCAAAACAGCCCTCTCTCTCTTCTCTTCAGTTAG

Translation (206 aa):
MSRKYFYFDYDYYGMSFCEEEITTEPEEKVAYTSNSGGFADEVTGIPKEGHQSSIGEHSCVMPNTQDTGR
EEPEETSKVAETSEQSLFRIPRKAYRFTPGQLWELQAVFVENQYPDALKRKELAGLLNVDEQKIKDWFNN
KRAKYRKIQREILGGKNITPTQEELRMKTLVESKKIIIFQEQEGDGLFWEHQNIDTQNSPLSLLFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH