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Report for CCDS30088.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30088.1 Public Mus musculus X Zbtb33 23 108 98 CCDS HistoryNCBI Gene:56805Re-query CCDS DB by CCDS ID:30088.1Re-query CCDS DB by GeneID:56805See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30088.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049740.2 ENSMUSP00000049983.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049740.2Link to Ensembl Protein Viewer:ENSMUSP00000049983.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000049740Re-query CCDS DB by Protein ID:ENSMUSP00000049983
Original member Current member EBI ENSMUST00000115142.2 ENSMUSP00000110795.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115142.2Link to Ensembl Protein Viewer:ENSMUSP00000110795.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115142Re-query CCDS DB by Protein ID:ENSMUSP00000110795
Original member Current member NCBI NM_001079513.1 NP_001072981.1 Accepted alive Link to Nucleotide Sequence:NM_001079513.1Link to Protein Sequence:NP_001072981.1Re-query CCDS DB by Nucleotide ID:NM_001079513Re-query CCDS DB by Protein ID:NP_001072981Link to BLAST:NP_001072981.1
Original member Current member NCBI NM_020256.2 NP_064652.2 Accepted alive Link to Nucleotide Sequence:NM_020256.2Link to Protein Sequence:NP_064652.2Re-query CCDS DB by Nucleotide ID:NM_020256Re-query CCDS DB by Protein ID:NP_064652Link to BLAST:NP_064652.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001072981.1 671 Q8BN78 671 100% 0 0
NP_064652.2 671 Q8BN78 671 100% 0 0

Chromosomal Locations for CCDS 30088.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 38192217 38194232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2016 nt):
ATGGAGAGTAGAAAACTGATTTCTGCTACAGACATTCAGTACTCTGCCAGTCTGCTGAACTCCTTGAATG
AACAGCGTGGCCATGGTCTCTTTTGTGATGTTACTGTTATTGTGGAAGACCGAAAATTCCGGGCCCATAG
GAACATCCTTTCAGCCTCGAGTACATACTTCCATCAGCTCTTCTCAGTTGCTGGGCAAGTTGTTGAACTA
AGCTTTATAAGAGCTGAGATTTTTGCAGAAATTCTGAACTATATCTACAGTTCCAAAGTTGTCCGTGTTA
GAGCAGATTTGCTTGACGAGTTAATTAAATCAGGGCAGTTACTAGGCGTGAAATTTATAGCAGAGCTTGG
TGTCCCACTGTCACAGGTTAAAAGCATATCAGGTACAGAACAGGATGGTACTGCTGAGACCTTACCTTCT
AGTTCTAGTGACAAAAGCCTTGACATGGAAAAATCAAAAGATGAAGCCCAAGATAATGGGGCTACAGTAA
TGCCCATTATAACTGAGTCTTTTTCACTATCTGCTGAAGATAATGAAATGAAAAAGATCATTGTTACTGA
CTCAGATGATGATGATGATGACGATGTCATTTTCTGCTCTGAAATTTTGCCTGCAAAGGAGGATTTGCCA
AGTAACAACACAGCAACACAGGTCCAGCCTAACCCAGCCTCTGTTGCTATTTCGGAAGTGACACCTTGCG
CTAGCAATAACTCGCCCCCTGTAACAAACATCACACCTACTCAACTTCCCACTCCTGTGAATCAGGCAAC
TCTAAGCCAAACACAAGGAAGTGAAGAATTGCTAGTGTCTTCAGCTTCAACACATCTGACTCCTAACATT
ATTTTGTTAAATCAGGCTCCACTTACTGCACCACCGAGTGCCAGTTCTTCACTCCCAAATCATATGTCCT
CTTCAGTCAATGTCCTTGTACAGAATCAGCAGACGCCTAACAGTGCTGTTTTAACAGGAAACAAGGCTGA
GGAAGAGGAAGAAATTATAGATGATGATGATGACATCATTAGCTCCAGTCCAGACTCAGCAGTCAGTAAT
ACATCTCTGGTCCCTCAGGCTGATAACTCCAAAAGTACCACTTTAGATGGATCATTGACACAGAAGATGC
AGATTCCTGTACTTCCTCAAGAGCCACCTTCTAATTCTTTAAAAATTTCAGATGTCATTACTAGAAACAC
TAATGATCCAGGCTTAAGGTCAAAACATGTAATGGAGGGTCAGAAGATCATTACATTAGATACAGCTACT
GAAATCGAAGGCTTGTCAACTGGTTGCAAGGTTTATGCAAATATCGGTGAAGATACTTACGATATAGTGA
TCCCTGTCAAAGATGACCCTGATGGAGGGGAGGCCAAACTTGATAATGAGCTACCAAAAACATCTGGCAG
TGAGCCACCAAACAAGCGTATGAAAGTAAAACATGATGATCACTATGAGTTAATAGTAGATGGAAGGGTC
TATTATATTTGCATTGTATGCAAAAGGTCCTATGTCTGTCTGACAAGCTTGCGAAGACATTTTAACATTC
ATTCTTGGGAGAAGAAGTATCAGTGCCGTTACTGTGATAAAGTATTTCCTCTTGCAGAATACCGCACCAA
GCATGAAATCCATCACACAGGGGAGCGAAGGTATCAGTGTTTAACGTGTGGCAAATCTTTCATCAACTAT
CAGTTTATGTCTTCACACATAAAGTCAGTTCATAGTCAAGATCCTTCTGGGGACTCAAAGCTTTATCGCT
TACATCCATGCAAGTCTTTACAGATCAGACAGTATGCATACCTTTCTAATAAGTCAAGTGCTATGCCTGT
CATGAAGGATGATGCTGTTGGATACAAGGTTGATGCTGGAAAAGAGCCTCCAGTAGGGACCACATCTACT
CCTCCTCAGAACAAGTCAACGTTCTGGGAAGATATTTTTATTCAGCAAGAAAATGATTCCATTTTTAAAC
AGAATGTAACCGATGGCAGTACTGAGTTTGAATTTATAATACCAGAATCTTACTGA

Translation (671 aa):
MESRKLISATDIQYSASLLNSLNEQRGHGLFCDVTVIVEDRKFRAHRNILSASSTYFHQLFSVAGQVVEL
SFIRAEIFAEILNYIYSSKVVRVRADLLDELIKSGQLLGVKFIAELGVPLSQVKSISGTEQDGTAETLPS
SSSDKSLDMEKSKDEAQDNGATVMPIITESFSLSAEDNEMKKIIVTDSDDDDDDDVIFCSEILPAKEDLP
SNNTATQVQPNPASVAISEVTPCASNNSPPVTNITPTQLPTPVNQATLSQTQGSEELLVSSASTHLTPNI
ILLNQAPLTAPPSASSSLPNHMSSSVNVLVQNQQTPNSAVLTGNKAEEEEEIIDDDDDIISSSPDSAVSN
TSLVPQADNSKSTTLDGSLTQKMQIPVLPQEPPSNSLKISDVITRNTNDPGLRSKHVMEGQKIITLDTAT
EIEGLSTGCKVYANIGEDTYDIVIPVKDDPDGGEAKLDNELPKTSGSEPPNKRMKVKHDDHYELIVDGRV
YYICIVCKRSYVCLTSLRRHFNIHSWEKKYQCRYCDKVFPLAEYRTKHEIHHTGERRYQCLTCGKSFINY
QFMSSHIKSVHSQDPSGDSKLYRLHPCKSLQIRQYAYLSNKSSAMPVMKDDAVGYKVDAGKEPPVGTTST
PPQNKSTFWEDIFIQQENDSIFKQNVTDGSTEFEFIIPESY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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