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Report for CCDS30104.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30104.1 Public Mus musculus X Smarca1 23 108 98 CCDS HistoryNCBI Gene:93761Re-query CCDS DB by CCDS ID:30104.1Re-query CCDS DB by GeneID:93761See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30104.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077569.10 ENSMUSP00000076769.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077569.10Link to Ensembl Protein Viewer:ENSMUSP00000076769.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000077569Re-query CCDS DB by Protein ID:ENSMUSP00000076769
Original member Current member EBI ENSMUST00000088973.10 ENSMUSP00000086366.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088973.10Link to Ensembl Protein Viewer:ENSMUSP00000086366.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000088973Re-query CCDS DB by Protein ID:ENSMUSP00000086366
Original member Current member NCBI NM_001358619.1 NP_001345548.1 Accepted alive Link to Nucleotide Sequence:NM_001358619.1Link to Protein Sequence:NP_001345548.1Re-query CCDS DB by Nucleotide ID:NM_001358619Re-query CCDS DB by Protein ID:NP_001345548Link to BLAST:NP_001345548.1
Original member Current member NCBI NM_053123.5 NP_444353.3 Accepted alive Link to Nucleotide Sequence:NM_053123.5Link to Protein Sequence:NP_444353.3Re-query CCDS DB by Nucleotide ID:NM_053123Re-query CCDS DB by Protein ID:NP_444353Link to BLAST:NP_444353.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345548.1 1046 Q6PGB8-1 1046 100% 0 0
NP_444353.3 1046 Q6PGB8-1 1046 100% 0 0

Chromosomal Locations for CCDS 30104.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 47811134 47811268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47823365 47823577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47823690 47823808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47826493 47826625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47828859 47828981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47841537 47841650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47841909 47842019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47849916 47850035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47851645 47851793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47852595 47852727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47854566 47854718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47858256 47858377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47860421 47860647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47861279 47861388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47874155 47874223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47875164 47875295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47876385 47876540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47879446 47879625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47883348 47883448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47883576 47883676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47884037 47884203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47887097 47887198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47892226 47892396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3141 nt):
ATGGAGCCGGACACGGCCACAGAGGCAGCCACCGTGGCAGTTTCGGATGCCAGAGCCACAGTCGTGGTTG
TAGAGGATGAGCAGCCCGGGCCGTCCACCTTTAAAGAGGAGGGAGCGGCTGCTGCCGCCACCGAAGGCAC
CACGGCCACTGAGAAGGGCGAGAAGAAGGAGAAAATCACTTCTCCATTTCAACTCAAACTTGCTGCTAAA
GCTTCCAAATCTGAAAAGGAAATGGATCCAGAATATGAAGAGAAAATGGTAAATATGCCCTTGAAAGCAG
ACCGCGCAAAGAGATTTGAGTTTTTACTGAAGCAGACGGAACTTTTTGCACATTTCATTCAGCCTTCAGC
ACAGAAGTCTCCAACATCTCCTCTCAACATGAAACTGGCTCGTCCTCGAGTAAAGAAAGATGACAAGCAG
AGCTTGATTTCCGTTGGAGACTATCGCCACAGGCGTACAGAACAAGAAGAGGATGAGGAGCTTCTCTCAG
AGAGTAGGAAAACATCGAATGTGTGTGTCAGATTCGAGGTCTCCCCTTCCTATGTGAAAGGAGGACCGCT
GAGAGATTATCAGATCCGAGGACTAAACTGGTTGATTTCTTTGTATGAAAATGGAGTCAATGGTATTTTA
GCTGATGAAATGGGTCTTGGGAAGACTTTACAAACCATTGCCTTGCTTGGTTACCTGAAGCACTACAGAA
ACATTCCTGGACCCCACATGGTTTTAGTTCCCAAGTCTACTTTACATAACTGGATGAATGAATTTAAACG
ATGGGTTCCATCTCTCCGTGTTATTTGTTTCGTTGGAGACAAAGATGTGAGAGCAGCTTTTATTCGTGAT
GAAATGATGCCAGGAGAGTGGGATGTTTGCGTGACTTCTTATGAGATGGTAATTAAAGAAAAATCTGTGT
TTAAAAAGTTTCACTGGCGATACTTAGTCATCGATGAAGCTCACAGAATAAAAAATGAAAAATCTAAGCT
TTCAGAGATTGTTCGTGAGTTCAAGTCAACTAATCGCTTACTTCTAACTGGGACACCTTTGCAGAATAAC
TTGCATGAGCTCTGGGCATTACTTAATTTTTTATTGCCGGATGTCTTTAATTCTGCAGATGACTTTGATT
CTTGGTTTGACACTAAAAATTGCCTTGGTGATCAAAAGCTTGTGGAAAGACTCCATGCAGTTTTAAAACC
ATTTTTGTTACGCCGGATAAAAACCGATGTAGAGAAGAGTCTGCCTCCTAAGAAGGAAATAAAGATTTAC
TTGGGCCTGAGTAAAATGCAACGAGAATGGTATACAAAAATTCTGATGAAAGATATTGATGTCTTAAACT
CTTCTGGCAAGATGGACAAGATGCGACTCTTGAATATTCTGATGCAGCTCCGAAAGTGTTGTAATCATCC
TTATCTGTTTGATGGAGCAGAGCCTGGTCCACCTTATACGACAGATGAGCACATTGTCGGCAATAGTGGT
AAAATGGTCGCTCTGGATAAGCTATTGGCGAGAATTAAAGAACAGGGATCAAGAGTTCTCATCTTTAGCC
AGATGACTCGACTGTTAGACATTTTGGAGGATTATTGTATGTGGCGTGGTTATGAGTATTCTCGACTGGA
TGGACAAACCCCACATGAAGAAAGAGAGGAAGCGATAGATGCCTTCAATGCTCCAAATAGCAGCAAATTC
ATCTTTATGCTGAGTACTAGGGCTGGAGGACTCGGAATTAACTTGGCAAGTGCTGATGTGGTCATCCTAT
ATGATTCAGACTGGAATCCACAGGTTGATTTACAAGCTATGGATCGGGCACATCGCATTGGTCAGAAGAA
GCCAGTACGAGTCTTCCGTCTCATTACAGACAACACAGTGGAAGAGAGGATTGTAGAAAGAGCTGAGATA
AAACTGAGACTTGATTCAATTGTTATACAGCAAGGAAGACTCATTGACCAACAATCTAACAAGCTGGCAA
AAGAGGAAATGCTACAAATGATCCGTCATGGAGCTACACATGTTTTTGCCTGTAAAGAAAGTGAGCTGAC
AGATGAGGACATTGTAACTATTCTGGAAAGAGGAGAAAAGAAGACTGCAGAGATGAATGAACGCATGCAG
AAAATGGGAGAGTCATCTCTAAGAAATTTTAGAATGGACCTTGAACAAAGTTTGTACAAGTTTGAAGGAG
AAGATTACAGAGAAAAACAAAAGCTGGGTACAGTGGAATGGATTGAACCTCCTAAACGAGAACGCAAAGC
CAACTATGCAGTGGATGCCTACTTTAGAGAGGCTTTACGTGTCAGCGAGCCAAAGATCCCAAAGGCTCCT
CGGCCTCCAAAACAGCCAAATGTTCAAGATTTTCAATTTTTTCCACCGCGCTTATTTGAGCTCCTGGAAA
AGGAAATTCTTTATTATCGGAAGACTATAGGTTACAAGGTCCCAAGAAATCCTGAGATCCCCAACCCAGC
TATAGCTCAAAGAGAAGAGCAAAAAAAGATTGATGGAGCGGAACCTCTTACACCACAAGAGACTGAAGAG
AAGGATAAACTTCTCACACAAGGTTTCACAAACTGGACTAAGCGAGATTTTAACCAGTTTATTAAAGCTA
ATGAGAAGTATGGGAGAGATGACATTGATAATATAGCTCGAGAGGTGGAGGGCAAGTCCCCTGAGGAGGT
CATGGAGTATTCAGCTGTATTTTGGGAACGCTGCAATGAATTACAGGACATTGAGAAAATTATGGCTCAA
ATTGAACGTGGAGAAGCAAGAATTCAGCGAAGGATCAGTATTAAGAAAGCACTGGATGCCAAAATTGCAA
GATACAAGGCTCCATTTCATCAGTTGCGTATTCAGTATGGAACCAGTAAAGGAAAGAACTATACTGAAGA
GGAAGACAGATTCTTGATCTGTATGTTACACAAAATGGGTTTTGACAGAGAAAATGTATATGAAGAATTA
AGGCAGTGTGTACGGAATGCTCCCCAGTTTAGATTTGACTGGTTCATCAAGTCGAGAACTGCCATGGAAT
TTCAGAGACGCTGTAATACTTTGATTTCATTGATTGAAAAAGAAAATATGGAAATTGAGGAAAGAGAGAG
AGCAGAAAAGAAGAAACGGGCAACTAAAACTCCAATGGTAAAATTTTCAGCATTTTCCTAA

Translation (1046 aa):
MEPDTATEAATVAVSDARATVVVVEDEQPGPSTFKEEGAAAAATEGTTATEKGEKKEKITSPFQLKLAAK
ASKSEKEMDPEYEEKMVNMPLKADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLARPRVKKDDKQ
SLISVGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGIL
ADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDVRAAFIRD
EMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNN
LHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIY
LGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVGNSG
KMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAFNAPNSSKF
IFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEI
KLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFACKESELTDEDIVTILERGEKKTAEMNERMQ
KMGESSLRNFRMDLEQSLYKFEGEDYREKQKLGTVEWIEPPKRERKANYAVDAYFREALRVSEPKIPKAP
RPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPEIPNPAIAQREEQKKIDGAEPLTPQETEE
KDKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVMEYSAVFWERCNELQDIEKIMAQ
IERGEARIQRRISIKKALDAKIARYKAPFHQLRIQYGTSKGKNYTEEEDRFLICMLHKMGFDRENVYEEL
RQCVRNAPQFRFDWFIKSRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMVKFSAFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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