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Report for CCDS30163.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30163.1 Public Mus musculus X Ldoc1 23 108 98 CCDS HistoryNCBI Gene:434784Re-query CCDS DB by CCDS ID:30163.1Re-query CCDS DB by GeneID:434784See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30163.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075983.5 ENSMUSP00000075366.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075983.5Link to Ensembl Protein Viewer:ENSMUSP00000075366.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000075983Re-query CCDS DB by Protein ID:ENSMUSP00000075366
Original member Current member NCBI NM_001018087.2 NP_001018097.1 Accepted alive Link to Nucleotide Sequence:NM_001018087.2Link to Protein Sequence:NP_001018097.1Re-query CCDS DB by Nucleotide ID:NM_001018087Re-query CCDS DB by Protein ID:NP_001018097Link to BLAST:NP_001018097.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001018097.1 151 Q7TPY9 151 100% 0 0

Chromosomal Locations for CCDS 30163.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 61709710 61710165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (456 nt):
ATGGTGGAAGAGCTGCTGTCGCTTCTGCACGCGCTTCTGGATAGGCACCAAGCCCTGTGCATGGAGAACC
ACCAGCTCCTGAAGCAGCTGCGACTGTTGGTGTGTGAGCGGGCCAGGCTGCTGCGCCAGGTATGTCCACC
GAGCTGTCCGGTGCCCTACCCCTCACGGTTTAGCGGCGAGAGTGGTCGGCTCCCTGAGTTTATCATGCAG
ACCATGTCTTACATGCTTGCGAATGAGGAGCACTTCTGCAATGATGCCATGAAAGTGGCATTCTTGATCA
GCCTCCTCTCCGGGGAAGCTGAGGAGTGGGTGATGCCTTACATCGAGTCAAATAGCTACGTCCTCGGTGA
TTATCAGGCCTTTGTTGATGAGATGAAGCAGTATTTTGGCTGGGGTACCGACGACGAAGATGATGGTGAT
GATGATGAAGAGGAAGAAATGGAGGAAGATCACTAG

Translation (151 aa):
MVEELLSLLHALLDRHQALCMENHQLLKQLRLLVCERARLLRQVCPPSCPVPYPSRFSGESGRLPEFIMQ
TMSYMLANEEHFCNDAMKVAFLISLLSGEAEEWVMPYIESNSYVLGDYQAFVDEMKQYFGWGTDDEDDGD
DDEEEEMEEDH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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