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Report for CCDS30179.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30179.1 Public Mus musculus X Cd99l2 23 108 98 CCDS HistoryNCBI Gene:171486Re-query CCDS DB by CCDS ID:30179.1Re-query CCDS DB by GeneID:171486See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30179.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080035.10 ENSMUSP00000078944.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080035.10Link to Ensembl Protein Viewer:ENSMUSP00000078944.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000080035Re-query CCDS DB by Protein ID:ENSMUSP00000078944
Original member Current member NCBI NM_138309.3 NP_612182.1 Accepted alive Link to Nucleotide Sequence:NM_138309.3Link to Protein Sequence:NP_612182.1Re-query CCDS DB by Nucleotide ID:NM_138309Re-query CCDS DB by Protein ID:NP_612182Link to BLAST:NP_612182.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612182.1 214 Q8BIF0-2 214 100% 0 0

Chromosomal Locations for CCDS 30179.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 71422685 71422749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71424024 71424089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71429047 71429166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71430311 71430349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71438134 71438199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71440525 71440611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71441074 71441145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71450611 71450673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71492522 71492588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (645 nt):
ATGGTGGCCAGGCTCACGGCTTTCCTCGTTTGCCTCGTTTTCTCCTTGGCCACCCTTGTCCAGAGAGGAT
AT
GGAGACACAGATGGTTTTAATCTGGAGGATGCACTGAAAGAAACTTCCTCAGTAAAGCAGAGATGGGA
C
CATGTTGCCACTACTACAACTAGAAGGCCAGGAACAACTAGAGCACCATCAAATCCTATGGAACTAGAT
GGG
TTTGACTTGGAAGATGCCTTGGATGATCGAAATGATCTAGATGGTCCCAAAAAGCCAAGTGCAGGAG
AA
GCAGGAGGTTGGTCAGACAAGGATCTTGAAGACATCGTGGAAGGTGGGGGATACAAACCTGACAAGAA
T
AAAGGCGGTGGTGGTTATGGCAGCAACGATGACCCTGGATCTGGCATATCGACAGAAACTGGCACCATT
GCA
GGTGTGGCCAGTGCCCTTGCTATGGCCCTGATTGGAGCTGTATCCAGCTACATCTCCTACCAGCAGA
AG
AAGTTTTGCTTCAGCATTCAGCAGGGCCTCAATGCAGACTACGTGAAGGGGGAGAACCTGGAAGCTGT
T
GTGTGTGAGGAGCCCCAAGTGACATACTCAAAACAAGAAACGCAGTCTGCAGAACCCCCACCACCCGAG
CCA
CCCCGGATTTGA


Translation (214 aa):
MVARLTAFLVCLVFSLATLVQRGYGDTDGFNLEDALKETSSVKQRWDHVATTTTRRPGTTRAPSNPMELD
G
FDLEDALDDRNDLDGPKKPSAGEAG
GWSDKDLEDIVEGGGYKPDKNKGGGGYGSNDDPGSGISTETGTI
A
GVASALAMALIGAVSSYISYQQKKFCFSIQ
QGLNADYVKGENLEAVVCEEPQVTYSKQETQSAEPPPPE
P
PRI




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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