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Report for CCDS3042.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3042.1 Public Homo sapiens 3 TPRA1 24 110 108 CCDS HistoryNCBI Gene:131601Re-query CCDS DB by CCDS ID:3042.1Re-query CCDS DB by GeneID:131601See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3042.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355552.8 ENSP00000347748.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355552.8Link to Ensembl Protein Viewer:ENSP00000347748.3Re-query CCDS DB by Nucleotide ID:ENST00000355552Re-query CCDS DB by Protein ID:ENSP00000347748
Original member Current member EBI ENST00000450633.6 ENSP00000413428.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000450633.6Link to Ensembl Protein Viewer:ENSP00000413428.2Re-query CCDS DB by Nucleotide ID:ENST00000450633Re-query CCDS DB by Protein ID:ENSP00000413428
Original member Current member EBI ENST00000489960.5 ENSP00000418298.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000489960.5Link to Ensembl Protein Viewer:ENSP00000418298.1Re-query CCDS DB by Nucleotide ID:ENST00000489960Re-query CCDS DB by Protein ID:ENSP00000418298
Original member Current member EBI ENST00000648957.1 ENSP00000498161.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648957.1Link to Ensembl Protein Viewer:ENSP00000498161.1Re-query CCDS DB by Nucleotide ID:ENST00000648957Re-query CCDS DB by Protein ID:ENSP00000498161
Original member Current member NCBI NM_001136053.4 NP_001129525.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001136053.4Link to Protein Sequence:NP_001129525.1Re-query CCDS DB by Nucleotide ID:NM_001136053Re-query CCDS DB by Protein ID:NP_001129525Link to BLAST:NP_001129525.1
Original member Current member NCBI NM_001353001.2 NP_001339930.1 Accepted alive Link to Nucleotide Sequence:NM_001353001.2Link to Protein Sequence:NP_001339930.1Re-query CCDS DB by Nucleotide ID:NM_001353001Re-query CCDS DB by Protein ID:NP_001339930Link to BLAST:NP_001339930.1
Original member Current member NCBI NM_001353002.2 NP_001339931.1 Accepted alive Link to Nucleotide Sequence:NM_001353002.2Link to Protein Sequence:NP_001339931.1Re-query CCDS DB by Nucleotide ID:NM_001353002Re-query CCDS DB by Protein ID:NP_001339931Link to BLAST:NP_001339931.1
Original member Current member NCBI NM_001353003.2 NP_001339932.1 Accepted alive Link to Nucleotide Sequence:NM_001353003.2Link to Protein Sequence:NP_001339932.1Re-query CCDS DB by Nucleotide ID:NM_001353003Re-query CCDS DB by Protein ID:NP_001339932Link to BLAST:NP_001339932.1
Original member Current member NCBI NM_001353004.2 NP_001339933.1 Accepted alive Link to Nucleotide Sequence:NM_001353004.2Link to Protein Sequence:NP_001339933.1Re-query CCDS DB by Nucleotide ID:NM_001353004Re-query CCDS DB by Protein ID:NP_001339933Link to BLAST:NP_001339933.1
Original member Current member NCBI NM_001353005.2 NP_001339934.1 Accepted alive Link to Nucleotide Sequence:NM_001353005.2Link to Protein Sequence:NP_001339934.1Re-query CCDS DB by Nucleotide ID:NM_001353005Re-query CCDS DB by Protein ID:NP_001339934Link to BLAST:NP_001339934.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129525.1 373 Q86W33-1 373 100% 0 0
NP_001339930.1 373 Q86W33-1 373 100% 0 0
NP_001339931.1 373 Q86W33-1 373 100% 0 0
NP_001339932.1 373 Q86W33-1 373 100% 0 0
NP_001339933.1 373 Q86W33-1 373 100% 0 0
NP_001339934.1 373 Q86W33-1 373 100% 0 0

Chromosomal Locations for CCDS 3042.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 127573521 127573788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127575185 127575265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127575403 127575505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127575749 127575809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127575940 127576050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127576617 127576696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127576821 127576893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127576990 127577076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127579740 127579872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127580022 127580146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGGACACCCTGGAGGAGGTGACTTGGGCCAATGGGAGCACAGCGCTACCCCCACCCCTGGCACCAAACA
TCAGTGTGCCTCATCGCTGCCTGCTGCTGCTCTACGAAGACATTGGCACCTCCAGGGTCCGGTACTGGGA
CCTCTTGCTGCTCATCCCCAATGTGCTCTTCCTCATCTTCCTGCTCTGGAAGCTTCCATCTGCTCGGGCG
AAGATCCGCATCACCTCCAGCCCCATTTTTATCACCTTCTACATCCTGGTGTTTGTGGTGGCGCTGGTGG
GCATTGCCCGGGCCGTGGTATCCATGACGGTGAGCACCTCGAACGCTGCAACTGTTGCTGATAAGATCCT
GTGGGAGATCACCCGCTTCTTCCTGCTGGCCATCGAGCTGAGTGTGATCATCCTGGGCCTGGCCTTTGGC
CACCTGGAGAGTAAGTCCAGCATCAAGCGGGTGCTGGCCATCACCACAGTGCTGTCCCTGGCCTACTCTG
TCACCCAGGGGACCCTGGAGATCCTGTACCCTGATGCCCATCTCTCAGCTGAGGACTTTAATATCTATGG
CCATGGGGGCCGCCAGTTCTGGCTGGTCAGCTCCTGCTTCTTCTTCCTGGTCTACTCTCTGGTGGTCATC
CTTCCCAAGACCCCGCTGAAGGAGCGCATCTCCCTGCCTTCTCGGAGGAGCTTCTACGTGTATGCGGGCA
TCCTGGCACTGCTCAACCTACTGCAGGGGCTGGGGAGTGTGCTGCTGTGCTTCGACATCATCGAGGGGCT
CTGCTGTGTAGATGCCACAACCTTCCTGTACTTCAGCTTCTTCGCTCCGCTCATCTACGTGGCTTTCCTC
CGGGGCTTCTTCGGCTCGGAGCCCAAGATCCTCTTCTCCTACAAATGCCAAGTGGACGAGACAGAGGAGC
CAGATGTACACCTACCCCAGCCCTACGCTGTGGCCCGGCGGGAGGGCCTGGAGGCTGCAGGGGCTGCTGG
GGCCTCAGCTGCCAGCTACTCGAGCACGCAGTTCGACTCTGCCGGCGGGGTGGCCTACCTGGATGACATC
GCTTCCATGCCCTGCCACACTGGCAGCATCAACAGCACAGACAGCGAGCGCTGGAAGGCCATCAATGCCT
GA

Translation (373 aa):
MDTLEEVTWANGSTALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFLIFLLWKLPSARA
KIRITSSPIFITFYILVFVVALVGIARAVVSMTVSTSNAATVADKILWEITRFFLLAIELSVIILGLAFG
HLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDAHLSAEDFNIYGHGGRQFWLVSSCFFFLVYSLVVI
LPKTPLKERISLPSRRSFYVYAGILALLNLLQGLGSVLLCFDIIEGLCCVDATTFLYFSFFAPLIYVAFL
RGFFGSEPKILFSYKCQVDETEEPDVHLPQPYAVARREGLEAAGAAGASAASYSSTQFDSAGGVAYLDDI
ASMPCHTGSINSTDSERWKAINA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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