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Report for CCDS30463.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30463.1 Public Mus musculus X Apex2 23 108 98 CCDS HistoryNCBI Gene:77622Re-query CCDS DB by CCDS ID:30463.1Re-query CCDS DB by GeneID:77622See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30463.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026303.15 ENSMUSP00000026303.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026303.15Link to Ensembl Protein Viewer:ENSMUSP00000026303.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000026303Re-query CCDS DB by Protein ID:ENSMUSP00000026303
Original member Current member EBI ENSMUST00000112720.7 ENSMUSP00000108340.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112720.7Link to Ensembl Protein Viewer:ENSMUSP00000108340.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112720Re-query CCDS DB by Protein ID:ENSMUSP00000108340
Original member NCBI NM_029943.2 NP_084219.1 Updated not alive Link to Nucleotide Sequence:NM_029943.2Link to Protein Sequence:NP_084219.1Re-query CCDS DB by Nucleotide ID:NM_029943Re-query CCDS DB by Protein ID:NP_084219
Current member NCBI NM_029943.3 NP_084219.1 Accepted alive Link to Nucleotide Sequence:NM_029943.3Link to Protein Sequence:NP_084219.1Re-query CCDS DB by Nucleotide ID:NM_029943Re-query CCDS DB by Protein ID:NP_084219Link to BLAST:NP_084219.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084219.1 516 Q68G58-1 516 99.6124% 0 2

Chromosomal Locations for CCDS 30463.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 150571768 150572682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150584465 150584534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150585201 150585347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150585865 150586045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150587043 150587126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150587923 150588076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1551 nt):
ATGCTGCGCGTGGTAAGCTGGAACATCAATGGGATCCGGAGTCCCCTGCAAGGCCTTGCATGCCAGGAAC
CCAGCAGCTGTCCCACGGCCTTGCGACGCGTTTTGGACGAGCTGGATGCTGATATTGTCTGTCTCCAGGA
GACCAAAGTGACCAGAGATGTACTGACAGAGCCCCTGGCTATTGTTGAGGGTTATAACTCCTATTTCAGC
TTCAGCCGCAGCCGTAGTGGCTATTCTGGTGTGGCTACCTTCTGTAAGGACAGTGCTACCCCAGTAGCTG
CTGAAGAAGGCCTGAGTGGTGTGTTTGCCACCCTGAATGGAGATATTGGTTGCTATGGAAACATGGATGA
GTTCACGCAAGAGGAACTCCGGGTTCTGGATAGTGAGGGCCGGGCCCTCCTTACACAGCACAAGATCCGC
ACATTGGAAGGGAAGGAGAAGACTTTGACCCTGATCAATGTGTACTGCCCTCACGCGGATCCTGGGAAGC
CTGAGCGGCTGACCTTCAAGATGCGCTTCTATCGCCTGCTCCAGATGCGAGCAGAAGCGCTCCTGGCAGC
TGGCAGTCACGTGATAATCCTGGGGGACCTGAATACAGCCCACCGACCCATTGACCACTGCGATGCAAGT
AGTCTGGAATGCTTTGAAGAGGACCCAGGGCGTAAGTGGATGGATGGCTTGCTCAGTAACCCAGGGGATG
AGGCTGGACCCCACATAGGGCTCTTCATGGATAGCTACCGCTACTTGCATCCAAAACAGCAGAGGGCTTT
CACCTGCTGGTCAGTGGTCAGTGGTGCACGCCATCTCAACTATGGCTCTAGACTTGACTATGTACTGGGA
GATAGGGCCTTGGTCATAGATACCTTCCAGGCCTCCTTCTTACTCCCTGAAGTGATGGGCTCTGACCACT
GCCCTGTGGGAGCTGTCTTAAATGTATCCTGTGTGCCAGCAAAACAGTGCCCAGCTCTGTGTACCCGCTT
CCTCCCCGAGTTTGCAGGTACCCAGCTCAAGATTCTTCGCTTCCTAGTTCCTCTTGAGCAAGAACCTGTG
CGGGAACAGCAAGTCCTGCAGCCCAGCCATCAAATCCAGGCACAGAGACAGCCAAGAAAAGCCTTCATGC
ATTCAACCAGGCTTCGGAAAAGTCAAGGTGGCCCCAAAAGAAAACAGAAAAACCTGATGAGTTACTTCCA
GCCTTCCTCCAGCCTTTCCCAAACTTCTGGTGTGGAGCTGCCTACCCTGCCTCTGGTGGGCCCTCTTACA
ACCCCAAAGACTGCAGAAGAGGTGGCAACAGCCACAATGCTAGAAGAGAAGAACAAGGTTCCAGAGTCCA
AAGATGAGAAGGGAGAAAGGACTGCCTTCTGGAAGTCTATGCTGAGTGGGCCCTCACCCATGCCCCTCTG
TGGAGGCCACAGGGAGCCATGTGTGATGCGTACTGTGAAAAAAACAGGACCCAACTTTGGTCGCCAGTTC
TACATGTGTGCTAGACCCCGAGGTCCTCCCAGTGACCCCTCTTCCCGCTGTAACTTCTTCCTCTGGAGCA
GGCCCAGCTGA

Translation (516 aa):
MLRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAIVEGYNSYFS
FSRSRSGYSGVATFCKDSATPVAAEEGLSGVFATLNGDIGCYGNMDEFTQEELRVLDSEGRALLTQHKIR
TLEGKEKTLTLINVYCPHADPGKPERLTFKMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDAS
SLECFEEDPGRKWMDGLLSNPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVLG
DRALVIDTFQASFLLPEVMGSDHCPVGAVLNVSCVPAKQCPALCTRFLPEFAGTQLKILRFLVPLEQEPV
REQQVLQPSHQIQAQRQPRKAFMHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPLVGPLT
TPKTAEEVATATMLEEKNKVPESKDEKGERTAFWKSMLSGPSPMPLCGGHREPCVMRTVKKTGPNFGRQF
YMCARPRGPPSDPSSRCNFFLWSRPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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