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Report for CCDS30521.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30521.1 Public Mus musculus X Vegfd 23 108 98 CCDS HistoryNCBI Gene:14205Re-query CCDS DB by CCDS ID:30521.1Re-query CCDS DB by GeneID:14205See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30521.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033751.7 ENSMUSP00000033751.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033751.7Link to Ensembl Protein Viewer:ENSMUSP00000033751.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033751Re-query CCDS DB by Protein ID:ENSMUSP00000033751
Original member NCBI NM_010216.2 NP_034346.1 Updated not alive Link to Nucleotide Sequence:NM_010216.2Link to Protein Sequence:NP_034346.1Re-query CCDS DB by Nucleotide ID:NM_010216Re-query CCDS DB by Protein ID:NP_034346
Current member NCBI NM_010216.3 NP_034346.1 Accepted alive Link to Nucleotide Sequence:NM_010216.3Link to Protein Sequence:NP_034346.1Re-query CCDS DB by Nucleotide ID:NM_010216Re-query CCDS DB by Protein ID:NP_034346Link to BLAST:NP_034346.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034346.1 358 P97946 358 100% 0 0

Chromosomal Locations for CCDS 30521.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 164373830 164373919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164385804 164386029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164391602 164391792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164394433 164394581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164395933 164396033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164400663 164400858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164402007 164402130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGTATGGAGAATGGGGAATGGGGAATATCCTCATGATGTTCCATGTGTACTTGGTGCAGGGCTTCAGGA
GCGAACATGGACCAGTGAAGGATTTTTCTTTTGAGCGATCATCCCGGTCCATGTTGGAACGATCTGAACA
ACAGATCCGAGCAGCTTCTAGTTTGGAGGAGTTGCTGCAAATCGCGCACTCTGAGGACTGGAAGCTGTGG
CGATGCCGGTTGAAGCTCAAAAGTCTTGCCAGTATGGACTCACGCTCAGCATCCCATCGCTCCACCAGAT
TTGCGGCAACTTTCTATGACACTGAAACACTAAAAGTTATAGATGAAGAATGGCAGAGGACCCAATGCAG
CCCTAGAGAGACATGCGTAGAAGTCGCCAGTGAGCTGGGGAAGACAACCAACACATTCTTCAAGCCCCCC
TGTGTAAATGTCTTCCGGTGTGGAGGCTGCTGCAACGAAGAGGGTGTGATGTGTATGAACACAAGCACCT
CCTACATCTCCAAACAGCTCTTTGAGATATCAGTGCCTCTGACATCAGTGCCCGAGTTAGTGCCTGTTAA
AATTGCCAACCATACGGGTTGTAAGTGCTTGCCCACGGGCCCCCGCCATCCTTACTCAATTATCAGAAGA
TCCATTCAGACCCCAGAAGAAGATGAATGTCCTCATTCCAAGAAACTCTGTCCTATTGACATGCTGTGGG
ATAACACCAAATGTAAATGTGTTTTGCAAGACGAGACTCCACTGCCTGGGACAGAAGACCACTCTTACCT
CCAGGAACCCACTCTCTGTGGACCGCACATGACGTTTGATGAAGATCGCTGTGAGTGCGTCTGTAAAGCA
CCATGTCCGGGAGATCTCATTCAGCACCCGGAAAACTGCAGTTGCTTTGAGTGCAAAGAAAGTCTGGAGA
GCTGCTGCCAAAAGCACAAGATTTTTCACCCAGACACCTGCAGCTGTGAGGACAGATGTCCTTTTCACAC
CAGAACATGTGCAAGTAGAAAGCCAGCCTGTGGAAAGCACTGGCGCTTTCCAAAGGAGACAAGGGCCCAG
GGACTCTACAGCCAGGAGAACCCTTGA

Translation (358 aa):
MYGEWGMGNILMMFHVYLVQGFRSEHGPVKDFSFERSSRSMLERSEQQIRAASSLEELLQIAHSEDWKLW
RCRLKLKSLASMDSRSASHRSTRFAATFYDTETLKVIDEEWQRTQCSPRETCVEVASELGKTTNTFFKPP
CVNVFRCGGCCNEEGVMCMNTSTSYISKQLFEISVPLTSVPELVPVKIANHTGCKCLPTGPRHPYSIIRR
SIQTPEEDECPHSKKLCPIDMLWDNTKCKCVLQDETPLPGTEDHSYLQEPTLCGPHMTFDEDRCECVCKA
PCPGDLIQHPENCSCFECKESLESCCQKHKIFHPDTCSCEDRCPFHTRTCASRKPACGKHWRFPKETRAQ
GLYSQENP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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