NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS30566.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30566.1 Public Homo sapiens 1 CALML6 24 110 108 CCDS HistoryNCBI Gene:163688Re-query CCDS DB by CCDS ID:30566.1Re-query CCDS DB by GeneID:163688See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30566.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307786.8 ENSP00000304643.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000307786.8Link to Ensembl Protein Viewer:ENSP00000304643.3Re-query CCDS DB by Nucleotide ID:ENST00000307786Re-query CCDS DB by Protein ID:ENSP00000304643
Original member Current member NCBI NM_138705.4 NP_619650.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138705.4Link to Protein Sequence:NP_619650.2Re-query CCDS DB by Nucleotide ID:NM_138705Re-query CCDS DB by Protein ID:NP_619650Link to BLAST:NP_619650.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_619650.2 181 Q8TD86 181 100% 0 0

Chromosomal Locations for CCDS 30566.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 1915281 1915307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1915685 1915735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1916441 1916615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1916752 1916896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1916974 1917074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1917147 1917193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGGGTCTTCAACAAGAAATCTCACTGCAGCCCTGGTGTCACCACCCTGCAGAATCCTGTCAGACAACCA
CCGACATGACAGAGCGCCTGTCGGCTGAGCAGATCAAGGAGTACAAGGGAGTCTTTGAGATGTTCGACGA
AGAGGGCAACGGGGAGGTGAAGACGGGGGAGCTGGAGTGGCTCATGAGCCTGCTGGGTATCAACCCCACC
AAGAGTGAGCTGGCCTCAATGGCCAAGGATGTGGACAGAGACAACAAAGGGTTCTTCAACTGCGATGGTT
TCCTGGCACTAATGGGAGTTTACCATGAGAAGGCCCAGAACCAGGAGAGCGAGCTGAGGGCGGCATTCCG
TGTCTTTGACAAAGAGGGCAAGGGCTACATTGACTGGAACACACTCAAGTACGTGCTAATGAACGCAGGG
GAGCCCCTCAACGAGGTGGAGGCGGAGCAGATGATGAAGGAGGCCGACAAGGATGGGGACAGGACCATCG
ACTATGAGGAGTTTGTGGCCATGATGACGGGGGAGTCCTTCAAGCTGATCCAGTAG

Translation (181 aa):
MGLQQEISLQPWCHHPAESCQTTTDMTERLSAEQIKEYKGVFEMFDEEGNGEVKTGELEWLMSLLGINPT
KSELASMAKDVDRDNKGFFNCDGFLALMGVYHEKAQNQESELRAAFRVFDKEGKGYIDWNTLKYVLMNAG
EPLNEVEAEQMMKEADKDGDRTIDYEEFVAMMTGESFKLIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH