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Report for CCDS3062.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3062.1 Public Homo sapiens 3 IFT122 24 110 108 CCDS HistoryNCBI Gene:55764Re-query CCDS DB by CCDS ID:3062.1Re-query CCDS DB by GeneID:55764See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3062.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000349441.6 ENSP00000324165.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000349441.6Link to Ensembl Protein Viewer:ENSP00000324165.3Re-query CCDS DB by Nucleotide ID:ENST00000349441Re-query CCDS DB by Protein ID:ENSP00000324165
Original member Current member NCBI NM_052990.3 NP_443716.1 Accepted alive Link to Nucleotide Sequence:NM_052990.3Link to Protein Sequence:NP_443716.1Re-query CCDS DB by Nucleotide ID:NM_052990Re-query CCDS DB by Protein ID:NP_443716Link to BLAST:NP_443716.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443716.1 1131 Q9HBG6-4 1131 100% 0 0

Chromosomal Locations for CCDS 3062.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 129440331 129440371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129449871 129449937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129451914 129451998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129463560 129463626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129464635 129464781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129469342 129469417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129476315 129476506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129476663 129476801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129478016 129478218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129479785 129479922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129481530 129481694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129483485 129483682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129488257 129488397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129492141 129492194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129495446 129495607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129499902 129500068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129502711 129502882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129504319 129504421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129506409 129506549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129507665 129507762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129512312 129512412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129514389 129514554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129515488 129515599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129517469 129517594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129519107 129519186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129519568 129519732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129520176 129520265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3396 nt):
ATGAGGGCCGTGTTGACGTGGAGAGATAAAGCCGAGCACTGTATAAATGACATCGCATTTAAGCCTGATG
GAACTCAACTGATTTTGGCTGCCGGAAGCAGATTACTGGTTTATGACACCTCTGATGGCACCTTACTTCA
GCCCCTCAAGGGACACAAAGACACTGTGTACTGTGTGGCATATGCGAAGGATGGGTTGTGGTCTCCTGAA
CAGAAGTCTGTCTCCAAACACAAATCAAGCAGCAAGATCATCTGCTGCAGCTGGACAAATGATGGTCAGT
ACCTGGCGCTGGGGATGTTCAATGGGATCATCAGCATACGGAACAAAAATGGCGAGGAGAAAGTAAAGAT
CGAGCGGCCGGGGGGCTCCCTCTCGCCAATATGGTCCATCTGCTGGAACCCTTCAAGAGAGGAACGTAAT
GACATCCTGGCTGTGGCTGACTGGGGACAGAAAGTTTCCTTCTACCAGCTGAGTGGAAAACAGATTGGAA
AGGATCGGGCACTGAACTTTGACCCCTGCTGCATCAGCTACTTTACTAAAGGCGAGTACATTTTGCTGGG
GGGTTCAGACAAGCAAGTATCTCTTTTCACCAAGGATGGAGTGCGGCTTGGGACTGTTGGGGAGCAGAAC
TCCTGGGTGTGGACGTGTCAAGCGAAACCGGATTCCAACTATGTGGTGGTCGGCTGCCAGGACGGCACCA
TTTCCTTCTACCAGCTTATTTTCAGCACAGTCCATGGGCTTTACAAGGACCGCTATGCCTACAGGGATAG
CATGACTGACGTCATTGTGCAGCACCTGATCACTGAGCAGAAAGTTCGGATTAAATGCAAAGAGCTTGTC
AAGAAGATTGCCATCTACAGAAATCGATTGGCTATCCAACTGCCAGAGAAAATCCTCATCTATGAGTTGT
ATTCAGAGGACTTATCAGACATGCATTACCGGGTAAAGGAGAAGATTATCAAGAAGTTTGAGTGCAACCT
CCTGGTGGTGTGTGCCAATCACATCATCCTGTGCCAGGAGAAACGGCTGCAGTGCCTGTCCTTCAGCGGA
GTGAAGGAGCGGGAGTGGCAGATGGAGTCTCTCATTCGTTACATCAAGGTGATCGGTGGCCCTCCTGGAA
GAGAAGGCCTCTTAGTGGGGCTGAAGAATGGACAGATCCTGAAGATCTTCGTGGACAATCTCTTTGCTAT
CGTCCTGCTGAAGCAGGCCACAGCTGTGCGCTGCTTGGACATGAGTGCCTCCCGTAAGAAGCTGGCCGTG
GTAGATGAAAATGACACTTGCCTGGTGTATGACATCGACACCAAGGAGCTGCTTTTTCAGGAACCAAACG
CCAACAGTGTAGCTTGGAACACCCAGTGTGAGGACATGCTCTGCTTCTCGGGAGGAGGCTACCTCAACAT
CAAAGCCAGCACCTTCCCTGTGCACCGGCAGAAGCTGCAGGGCTTTGTGGTCGGCTACAATGGCTCCAAG
ATCTTCTGCCTCCATGTCTTCTCCATTTCTGCCGTGGAGGTGCCGCAGTCCGCTCCCATGTACCAGTACC
TGGATAGGAAACTGTTCAAGGAAGCCTACCAGATTGCTTGCTTGGGTGTCACAGACACTGATTGGCGTGA
ACTGGCCATGGAAGCGCTAGAAGGTTTAGATTTTGAAACAGCAAAGAAGGCCTTCATCAGAGTACAAGAC
CTCCGATATTTAGAGCTCATCAGCAGCATTGAGGAGAGGAAGAAGCGGGGAGAGACCAACAATGACCTGT
TTCTGGCAGATGTGTTTTCCTACCAGGGGAAGTTCCATGAGGCCGCCAAACTGTACAAGAGGAGTGGGCA
CGAGAACCTCGCGCTTGAAATGTACACCGACCTCTGCATGTTTGAGTATGCCAAGGATTTCCTTGGATCT
GGAGACCCCAAAGAAACAAAGATGCTAATCACCAAACAGGCTGACTGGGCCAGAAATATCAAGGAGCCCA
AAGCCGCCGTGGAGATGTACATCTCAGCAGGAGAGCACGTCAAGGCCATCGAGATCTGTGGTGACCATGG
CTGGGTTGACATGTTGATCGACATCGCCCGCAAACTGGACAAGGCTGAGCGCGAGCCCCTGCTGCTGTGC
GCTACCTACCTCAAGAAGCTGGACAGCCCTGGCTATGCTGCTGAGACCTACCTGAAGATGGGTGACCTCA
AGTCCCTGGTGCAGCTGCACGTGGAGACCCAGCGCTGGGATGAGGCCTTTGCTTTGGGTGAGAAGCATCC
TGAGTTTAAGGATGACATCTACATGCCGTATGCTCAGTGGCTAGCAGAGAACGATCGCTTTGAGGAAGCC
CAGAAAGCGTTCCACAAGGCTGGGCGACAGAGAGAAGCGGTCCAGGTGCTGGAGCAGCTCACAAACAATG
CCGTGGCGGAGAGCAGGTTTAATGATGCTGCCTATTATTACTGGATGCTGTCCATGCAGTGCCTCGATAT
AGCTCAAGCAGATCCTGCCCAGAAGGACACAATGCTTGGCAAGTTCTACCACTTCCAGCGTTTGGCAGAG
CTGTACCATGGTTACCATGCCATCCATCGCCACACGGAAGATCCGTTCAGTGTCCATCGTCCTGAAACTC
TTTTCAACATCTCCAGGTTCCTGCTGCACAGCCTGCCCAAGGACACCCCCTCGGGCATCTCTAAAGTGAA
AATACTCTTCACCTTGGCCAAGCAGAGCAAGGCCCTCGGTGCCTACAGGCTGGCCCGGCACGCCTATGAC
AAGCTGCGTGGCCTGTACATCCCTGCCAGATTCCAAAAGTCCATTGAGCTGGGTACCCTGACCATCCGCG
CCAAGCCCTTCCACGACAGTGAGGAGTTGGTGCCCTTGTGCTACCGCTGCTCCACCAACAACCCGCTGCT
CAACAACCTGGGCAACGTCTGCATCAACTGCCGCCAGCCCTTCATCTTCTCCGCCTCTTCCTACGACGTG
CTACACCTGGTTGAGTTCTACCTGGAGGAAGGGATCACTGATGAAGAAGCCATCTCCCTCATCGACCTGG
AGGTGCTGAGACCCAAGCGGGATGACAGACAGCTAGAGATTGCAAACAACAGCTCCCAGATTCTGCGGCT
AGTGGAGACCAAGGACTCCATCGGAGATGAGGACCCGTTCACAGCTAAGCTGAGCTTTGAGCAAGGTGGC
TCAGAGTTCGTGCCAGTGGTGGTGAGCCGGCTGGTGCTGCGCTCCATGAGCCGCCGGGATGTCCTCATCA
AGCGATGGCCCCCACCCCTGAGGTGGCAATACTTCCGCTCACTGCTGCCTGACGCCTCCATTACCATGTG
CCCCTCCTGCTTCCAGATGTTCCATTCTGAGGACTATGAGTTGCTGGTGCTTCAGCATGGCTGCTGCCCC
TACTGCCGCAGGTGCAAGGATGACCCTGGCCCATGA

Translation (1131 aa):
MRAVLTWRDKAEHCINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGLWSPE
QKSVSKHKSSSKIICCSWTNDGQYLALGMFNGIISIRNKNGEEKVKIERPGGSLSPIWSICWNPSREERN
DILAVADWGQKVSFYQLSGKQIGKDRALNFDPCCISYFTKGEYILLGGSDKQVSLFTKDGVRLGTVGEQN
SWVWTCQAKPDSNYVVVGCQDGTISFYQLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKELV
KKIAIYRNRLAIQLPEKILIYELYSEDLSDMHYRVKEKIIKKFECNLLVVCANHIILCQEKRLQCLSFSG
VKEREWQMESLIRYIKVIGGPPGREGLLVGLKNGQILKIFVDNLFAIVLLKQATAVRCLDMSASRKKLAV
VDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGGYLNIKASTFPVHRQKLQGFVVGYNGSK
IFCLHVFSISAVEVPQSAPMYQYLDRKLFKEAYQIACLGVTDTDWRELAMEALEGLDFETAKKAFIRVQD
LRYLELISSIEERKKRGETNNDLFLADVFSYQGKFHEAAKLYKRSGHENLALEMYTDLCMFEYAKDFLGS
GDPKETKMLITKQADWARNIKEPKAAVEMYISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLC
ATYLKKLDSPGYAAETYLKMGDLKSLVQLHVETQRWDEAFALGEKHPEFKDDIYMPYAQWLAENDRFEEA
QKAFHKAGRQREAVQVLEQLTNNAVAESRFNDAAYYYWMLSMQCLDIAQADPAQKDTMLGKFYHFQRLAE
LYHGYHAIHRHTEDPFSVHRPETLFNISRFLLHSLPKDTPSGISKVKILFTLAKQSKALGAYRLARHAYD
KLRGLYIPARFQKSIELGTLTIRAKPFHDSEELVPLCYRCSTNNPLLNNLGNVCINCRQPFIFSASSYDV
LHLVEFYLEEGITDEEAISLIDLEVLRPKRDDRQLEIANNSSQILRLVETKDSIGDEDPFTAKLSFEQGG
SEFVPVVVSRLVLRSMSRRDVLIKRWPPPLRWQYFRSLLPDASITMCPSCFQMFHSEDYELLVLQHGCCP
YCRRCKDDPGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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