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Report for CCDS30702.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30702.1 Public Homo sapiens 1 IPP 24 110 108 CCDS HistoryNCBI Gene:3652Re-query CCDS DB by CCDS ID:30702.1Re-query CCDS DB by GeneID:3652See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30702.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396478.4 ENSP00000379739.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396478.4Link to Ensembl Protein Viewer:ENSP00000379739.3Re-query CCDS DB by Nucleotide ID:ENST00000396478Re-query CCDS DB by Protein ID:ENSP00000379739
Original member Current member NCBI NM_005897.3 NP_005888.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005897.3Link to Protein Sequence:NP_005888.1Re-query CCDS DB by Nucleotide ID:NM_005897Re-query CCDS DB by Protein ID:NP_005888Link to BLAST:NP_005888.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005888.1 584 Q9Y573-1 584 100% 0 0

Chromosomal Locations for CCDS 30702.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 45699966 45700190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45714246 45714466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45716895 45717017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45719203 45719340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45727631 45727798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45729614 45729769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45740901 45741332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45746120 45746411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1755 nt):
ATGGCTAATGAGGACTGTCCCAAGGCTGCTGATAGTCCTTTTTCATCAGATAAACATGCCCAACTCATCT
TGGCCCAAATCAATAAGATGAGAAATGGACAGCATTTCTGTGATGTGCAGCTGCAAGTTGGACAGGAAAG
TTTTAAAGCTCATCGGCTGGTTTTGGCTGCCAGCAGTCCTTACTTTGCAGCTTTGTTCACTGGAGGAATG
AAAGAGTCCTCAAAAGATGTTGTACCGATTCTAGGAATTGAAGCAGGAATCTTTCAGATACTTCTAGATT
TCATTTACACAGGTATAGTGAACATAGGTGTGAATAATGTCCAGGAGTTGATTATTGCAGCAGACATGCT
ACAGTTGACTGAAGTTGTTCATCTTTGCTGTGAATTTCTGAAAGGACAAATTGATCCACTGAACTGCATT
GGAATTTTTCAGTTCTCTGAGCAAATTGCCTGCCATGATCTCTTGGAATTCTCAGAAAACTACATTCATG
TCCATTTCTTGGAGGTTCATAGTGGAGAAGAGTTCCTGGCACTTACGAAAGATCAGCTGATCAAAATTTT
GCGAAGTGAAGAGCTTAGCATTGAGGATGAATACCAGGTCTTCTTAGCTGCAATGCAATGGATTCTGAAA
GATTTGGGAAAAAGAAGAAAACATGTGGTGGAAGTGCTAGACCCAATTCGATTCCCTTTATTACCTCCTC
AGAGACTTTTAAAGTATATAGAAGGAGTATCCGATTTTAATCTTCGTGTTGCATTGCAAACACTTCTGAA
AGAGTACTGTGAAGTATGCAAATCTCCCAAAGAGAACAAGTTTTGTAGTTTTCTGCAGACATCTAAGGTT
CGACCTCGGAAGAAAGCAAGAAAGTACCTGTATGCAGTAGGTGGATATACTCGGTTGCAGGGGGGTCGCT
GGAGTGATAGCAGAGCCCTCAGCTGTGTAGAACGTTTTGACACCTTTAGCCAGTACTGGACCACTGTGTC
TTCACTTCATCAGGCTCGAAGTGGGCTGGGAGTAACAGTTCTGGGAGGGATGGTCTACGCTATTGGAGGT
GAAAAGGATTCAATGATTTTTGATTGTACTGAATGCTATGATCCAGTTACTAAACAGTGGACAACTGTAG
CTTCGATGAATCATCCCCGCTGCGGCTTAGGAGTGTGTGTGTGTTATGGGGCTATCTATGCTTTGGGTGG
ATGGGTTGGAGCTGAGATAGGGAACACCATTGAACGATTTGATCCTGATGAAAATAAATGGGAAGTAGTT
GGTAACATGGCTGTGTCACGCTACTACTTTGGGTGCTGTGAAATGCAAGGTTTAATTTATGTAATTGGGG
GCATCAGCAATGAAGGAATAGAACTTCGTTCTTTTGAAGTCTATGATCCACTTTCTAAGCGTTGGTCTCC
ACTTCCTCCAATGGGAACCAGGAGAGCATATCTTGGTGTGGCTGCACTCAATGACTGCATCTATTCTGTT
GGAGGATGGAATGAGACCCAAGATGCTCTTCATACTGTAGAAAAATATTCCTTTGAAGAGGAAAAGTGGG
TTGAAGTTGCCTCAATGAAAGTGCCTAGAGCAGGCATGTGTGTTGTGGCAGTCAATGGTCTTCTGTATGT
TTCTGGAGGTCGATCTTCCAGCCATGATTTTTTGGCTCCAGGTACCTTGGACTCAGTTGAAGTTTATAAC
CCTCATTCAGATACATGGACAGAAATTGGTAACATGATCACCAGTCGTTGTGAAGGGGGCGTTGCTGTGC
TATGA

Translation (584 aa):
MANEDCPKAADSPFSSDKHAQLILAQINKMRNGQHFCDVQLQVGQESFKAHRLVLAASSPYFAALFTGGM
KESSKDVVPILGIEAGIFQILLDFIYTGIVNIGVNNVQELIIAADMLQLTEVVHLCCEFLKGQIDPLNCI
GIFQFSEQIACHDLLEFSENYIHVHFLEVHSGEEFLALTKDQLIKILRSEELSIEDEYQVFLAAMQWILK
DLGKRRKHVVEVLDPIRFPLLPPQRLLKYIEGVSDFNLRVALQTLLKEYCEVCKSPKENKFCSFLQTSKV
RPRKKARKYLYAVGGYTRLQGGRWSDSRALSCVERFDTFSQYWTTVSSLHQARSGLGVTVLGGMVYAIGG
EKDSMIFDCTECYDPVTKQWTTVASMNHPRCGLGVCVCYGAIYALGGWVGAEIGNTIERFDPDENKWEVV
GNMAVSRYYFGCCEMQGLIYVIGGISNEGIELRSFEVYDPLSKRWSPLPPMGTRRAYLGVAALNDCIYSV
GGWNETQDALHTVEKYSFEEEKWVEVASMKVPRAGMCVVAVNGLLYVSGGRSSSHDFLAPGTLDSVEVYN
PHSDTWTEIGNMITSRCEGGVAVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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