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Report for CCDS3098.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3098.1 Public Homo sapiens 3 ARMC8 24 110 108 CCDS HistoryNCBI Gene:25852Re-query CCDS DB by CCDS ID:3098.1Re-query CCDS DB by GeneID:25852See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3098.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358441.6 ENSP00000351221.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358441.6Link to Ensembl Protein Viewer:ENSP00000351221.2Re-query CCDS DB by Nucleotide ID:ENST00000358441Re-query CCDS DB by Protein ID:ENSP00000351221
Original member Current member EBI ENST00000471453.5 ENSP00000420440.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000471453.5Link to Ensembl Protein Viewer:ENSP00000420440.1Re-query CCDS DB by Nucleotide ID:ENST00000471453Re-query CCDS DB by Protein ID:ENSP00000420440
Original member Current member NCBI NM_014154.4 NP_054873.2 Accepted alive Link to Nucleotide Sequence:NM_014154.4Link to Protein Sequence:NP_054873.2Re-query CCDS DB by Nucleotide ID:NM_014154Re-query CCDS DB by Protein ID:NP_054873Link to BLAST:NP_054873.2
Original member Current member NCBI NM_213654.3 NP_998819.1 Accepted alive Link to Nucleotide Sequence:NM_213654.3Link to Protein Sequence:NP_998819.1Re-query CCDS DB by Nucleotide ID:NM_213654Re-query CCDS DB by Protein ID:NP_998819Link to BLAST:NP_998819.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054873.2 385 Q8IUR7-6 385 100% 0 0
NP_998819.1 385 Q8IUR7-6 385 100% 0 0

Chromosomal Locations for CCDS 3098.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 138188528 138188530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138209817 138209893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138221926 138221997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138223389 138223531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138223636 138223733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138228918 138229010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138235034 138235114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138237309 138237384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138237482 138237572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138239468 138239528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138241783 138241983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138245088 138245249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGGAAGTAACAGCTAGCAGTCGCCACTATGTTGACAGGCTATTTGACCCTGATCCCCAGAAAGTTCTAC
AAGGTGTCATAGACATGAAAAATGCTGTAATTGGAAACAACAAGCAGAAAGCCAATCTCATTGTTTTAGG
AGCTGTTCCAAGATTGTTGTACTTGCTTCAGCAAGAAACCTCAAGCACAGAGCTGAAAACTGAATGTGCA
GTGGTGTTGGGAAGTCTTGCTATGGGTACTGAAAACAATGTCAAGTCTCTACTGGACTGCCATATTATCC
CTGCCTTATTGCAAGGACTACTGTCCCCAGACCTGAAGTTTATTGAAGCTTGCCTCCGATGCCTGCGTAC
CATCTTCACCAGTCCTGTCACTCCAGAGGAGCTACTGTATACAGATGCCACAGTGATACCACACCTCATG
GCACTGCTTAGCAGGTCCCGCTATACCCAGGAGTACATCTGTCAGATCTTCTCACACTGCTGTAAAGGGC
CAGATCATCAAACAATTTTATTTAACCACGGTGCAGTTCAGAATATTGCTCACCTACTAACCTCACTGTC
CTACAAAGTTCGAATGCAAGCACTGAAATGTTTCTCAGTTTTAGCTTTTGAAAACCCCCAGGTATCGATG
ACCCTGGTAAATGTTTTGGTTGATGGAGAATTGTTACCACAGATTTTTGTGAAGATGTTACAGAGGGATA
AGCCTATTGAGATGCAGCTCACATCAGCAAAATGTTTAACTTACATGTGTAGAGCTGGAGCAATTCGGAC
AGATGATAACTGTATTGTATTAAAGACATTACCTTGTTTGGTTCGAATGTGCAGTAAGGAGAGATTACTA
GAGGAGAGAGTTGAAGGAGCTGAGACACTTGCCTATCTGATTGAACCAGATGTTGAGCTACAGAGAATCG
CTAGCATAACTGATCACCTCATTGCCATGCTTGCTGATTATTTCAAGTATCCCAGCTCAGTGAGTGCCAT
CACTGATATTAAAAGGCTTGATCATGATTTAAAACATGCTCACGAACTCCGCCAGGCTGCATTCAAGCTC
TATGCCTCTCTTGGAGCAAATGATGAAGACATCCGGAAGAAGGTGAGTCTGGGAGAGGGGCGTCCCCCAG
TCCTGACAGCCAGCAGGCAGGGAGTGACGTCAACCTGA

Translation (385 aa):
MEVTASSRHYVDRLFDPDPQKVLQGVIDMKNAVIGNNKQKANLIVLGAVPRLLYLLQQETSSTELKTECA
VVLGSLAMGTENNVKSLLDCHIIPALLQGLLSPDLKFIEACLRCLRTIFTSPVTPEELLYTDATVIPHLM
ALLSRSRYTQEYICQIFSHCCKGPDHQTILFNHGAVQNIAHLLTSLSYKVRMQALKCFSVLAFENPQVSM
TLVNVLVDGELLPQIFVKMLQRDKPIEMQLTSAKCLTYMCRAGAIRTDDNCIVLKTLPCLVRMCSKERLL
EERVEGAETLAYLIEPDVELQRIASITDHLIAMLADYFKYPSSVSAITDIKRLDHDLKHAHELRQAAFKL
YASLGANDEDIRKKVSLGEGRPPVLTASRQGVTST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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