NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS31174.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31174.2 Public Homo sapiens 10 LYZL1 24 110 108 CCDS HistoryNCBI Gene:84569Re-query CCDS DB by CCDS ID:31174.2Re-query CCDS DB by GeneID:84569See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 31174.1
The coding region has been updated to start at a downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 31174.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000649382.2 ENSP00000498092.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000649382.2Link to Ensembl Protein Viewer:ENSP00000498092.1Re-query CCDS DB by Nucleotide ID:ENST00000649382Re-query CCDS DB by Protein ID:ENSP00000498092
Original member Current member NCBI NM_032517.6 NP_115906.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032517.6Link to Protein Sequence:NP_115906.4Re-query CCDS DB by Nucleotide ID:NM_032517Re-query CCDS DB by Protein ID:NP_115906Link to BLAST:NP_115906.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115906.4 148 Q6UWQ5-1 148 100% 0 0

Chromosomal Locations for CCDS 31174.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 29291868 29292006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 29292519 29292677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 29310110 29310188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 29310990 29311059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (447 nt):
ATGAAGGCTGCGGGCATTCTGACCCTCATTGGCTGCCTGGTCACAGGCGCCGAGTCCAAAATCTACACTC
GTTGCAAACTGGCAAAAATATTCTCGAGGGCTGGCCTGGACAATTACTGGGGCTTCAGCCTTGGAAACTG
GATCTGCATGGCATATTATGAGAGCGGCTACAACACCACAGCCCAGACGGTCCTGGATGACGGCAGCATC
GACTATGGCATCTTCCAGATCAACAGCTTCGCGTGGTGCAGACGCGGAAAGCTGAAGGAGAACAACCACT
GCCATGTCGCCTGCTCAGCCTTGATCACTGATGACCTCACAGATGCAATTATCTGTGCCAGGAAAATTGT
TAAAGAGACACAAGGAATGAACTATTGGCAAGGCTGGAAGAAACATTGTGAGGGCAGAGACCTGTCCGAG
TGGAAAAAAGGCTGTGAGGTTTCCTAA

Translation (148 aa):
MKAAGILTLIGCLVTGAESKIYTRCKLAKIFSRAGLDNYWGFSLGNWICMAYYESGYNTTAQTVLDDGSI
DYGIFQINSFAWCRRGKLKENNHCHVACSALITDDLTDAIICARKIVKETQGMNYWQGWKKHCEGRDLSE
WKKGCEVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH