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Report for CCDS31393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31393.1 Public Homo sapiens 11 TRIM5 24 110 108 CCDS HistoryNCBI Gene:85363Re-query CCDS DB by CCDS ID:31393.1Re-query CCDS DB by GeneID:85363See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31393.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380034.8 ENSP00000369373.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380034.8Link to Ensembl Protein Viewer:ENSP00000369373.3Re-query CCDS DB by Nucleotide ID:ENST00000380034Re-query CCDS DB by Protein ID:ENSP00000369373
Original member Current member EBI ENST00000684655.1 ENSP00000507420.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000684655.1Link to Ensembl Protein Viewer:ENSP00000507420.1Re-query CCDS DB by Nucleotide ID:ENST00000684655Re-query CCDS DB by Protein ID:ENSP00000507420
Original member Current member NCBI NM_033034.3 NP_149023.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033034.3Link to Protein Sequence:NP_149023.2Re-query CCDS DB by Nucleotide ID:NM_033034Re-query CCDS DB by Protein ID:NP_149023Link to BLAST:NP_149023.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149023.2 493 Q9C035-1 493 100% 0 0

Chromosomal Locations for CCDS 31393.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5664809 5665395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5665656 5665682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5665981 5666081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5667689 5667711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5678204 5678434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5679074 5679169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5679761 5680177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGGCTTCTGGAATCCTGGTTAATGTAAAGGAGGAGGTGACCTGCCCCATCTGCCTGGAACTCCTGACAC
AACCCCTGAGCCTGGACTGCGGCCACAGCTTCTGCCAAGCATGCCTCACTGCAAACCACAAGAAGTCCAT
GCTAGACAAAGGAGAGAGTAGCTGCCCTGTGTGCCGGATCAGTTACCAGCCTGAGAACATACGGCCTAAT
CGGCATGTAGCCAACATAGTGGAGAAGCTCAGGGAGGTCAAGTTGAGCCCAGAGGGGCAGAAAGTTGATC
ATTGTGCACGCCATGGAGAGAAACTTCTACTCTTCTGTCAGGAGGACGGGAAGGTCATTTGCTGGCTTTG
TGAGCGGTCTCAGGAGCACCGTGGTCACCACACGTTCCTCACAGAGGAGGTTGCCCGGGAGTACCAAGTG
AAGCTCCAGGCAGCTCTGGAGATGCTGAGGCAGAAGCAGCAGGAAGCTGAAGAGTTAGAAGCTGACATCA
GAGAAGAGAAAGCTTCCTGGAAGACTCAAATACAGTATGACAAAACCAACGTCTTGGCAGATTTTGAGCA
ACTGAGAGACATCCTGGACTGGGAGGAGAGCAATGAGCTGCAAAACCTGGAGAAGGAGGAGGAAGACATT
CTGAAAAGCCTTACGAACTCTGAAACTGAGATGGTGCAGCAGACCCAGTCCCTGAGAGAGCTCATCTCAG
ATCTGGAGCATCGGCTGCAGGGGTCAGTGATGGAGCTGCTTCAGGGTGTGGATGGCGTCATAAAAAGGAC
GGAGAACGTGACCTTGAAGAAGCCAGAAACTTTTCCAAAAAATCAAAGGAGAGTGTTTCGAGCTCCTGAT
CTGAAAGGAATGCTAGAAGTGTTTAGAGAGCTGACAGATGTCCGACGCTACTGGGTTGATGTGACAGTGG
CTCCAAACAACATTTCATGTGCTGTCATTTCTGAAGATAAGAGACAAGTGAGCTCTCCGAAACCACAGAT
AATATATGGGGCACGAGGGACAAGATACCAGACATTTGTGAATTTCAATTATTGTACTGGCATCCTGGGC
TCTCAAAGTATCACATCAGGGAAACATTACTGGGAGGTAGACGTGTCCAAGAAAACTGCTTGGATCCTGG
GGGTATGTGCTGGCTTCCAACCTGATGCAATGTGTAATATTGAAAAAAATGAAAATTATCAACCTAAATA
CGGCTACTGGGTTATAGGGTTAGAGGAAGGAGTTAAATGTAGTGCTTTCCAGGATAGTTCCTTCCATACT
CCTTCTGTTCCTTTCATTGTGCCCCTCTCTGTGATTATTTGTCCTGATCGTGTTGGAGTTTTCCTAGACT
ATGAGGCTTGCACTGTCTCATTCTTCAATATCACAAACCATGGATTTCTCATCTATAAGTTTTCTCACTG
TTCTTTTTCTCAGCCTGTATTTCCATATTTAAATCCTAGAAAATGTGGAGTCCCCATGACTCTGTGCTCA
CCAAGCTCTTGA

Translation (493 aa):
MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN
RHVANIVEKLREVKLSPEGQKVDHCARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFLTEEVAREYQV
KLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDKTNVLADFEQLRDILDWEESNELQNLEKEEEDI
LKSLTNSETEMVQQTQSLRELISDLEHRLQGSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRVFRAPD
LKGMLEVFRELTDVRRYWVDVTVAPNNISCAVISEDKRQVSSPKPQIIYGARGTRYQTFVNFNYCTGILG
SQSITSGKHYWEVDVSKKTAWILGVCAGFQPDAMCNIEKNENYQPKYGYWVIGLEEGVKCSAFQDSSFHT
PSVPFIVPLSVIICPDRVGVFLDYEACTVSFFNITNHGFLIYKFSHCSFSQPVFPYLNPRKCGVPMTLCS
PSS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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