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Report for CCDS31721.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31721.1 Public Homo sapiens 11 SNX19 24 110 108 CCDS HistoryNCBI Gene:399979Re-query CCDS DB by CCDS ID:31721.1Re-query CCDS DB by GeneID:399979See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31721.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265909.9 ENSP00000265909.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265909.9Link to Ensembl Protein Viewer:ENSP00000265909.4Re-query CCDS DB by Nucleotide ID:ENST00000265909Re-query CCDS DB by Protein ID:ENSP00000265909
Original member Current member NCBI NM_014758.3 NP_055573.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014758.3Link to Protein Sequence:NP_055573.3Re-query CCDS DB by Nucleotide ID:NM_014758Re-query CCDS DB by Protein ID:NP_055573Link to BLAST:NP_055573.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055573.3 992 Q92543-1 992 100% 0 0

Chromosomal Locations for CCDS 31721.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 130878422 130878554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 130879624 130879711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 130880622 130880806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 130903255 130903384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 130905953 130906133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 130906625 130906721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 130907953 130908083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 130910018 130910137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 130910270 130910370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 130911633 130911771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 130914266 130915939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2979 nt):
ATGAAGACAGAAACAGTGCCACCGTTCCAGGAAACTCCAGCTGGATCGAGCTGTCACCTCAATAACCTGT
TGAGTAGCCGGAAGCTGATGGCTGTGGGGGTCTTGCTTGGCTGGCTCCTGGTCATACACCTTCTGGTCAA
CGTGTGGCTGCTGTGCCTTCTGTCGGCATTGCTAGTGGTGCTGGGAGGATGGCTGGGCTCCAGCCTCGCT
GGAGTGGCTTCAGGTCGACTGCATCTGGAACGCTTCATCCCGTTGGCCACCTGTCCTCCATGCCCTGAGG
CAGAAAGGCAGCTGGAACGGGAGATCAACCGCACCATCCAGATGATTATTCGAGATTTTGTGTTATCTTG
GTACCGTTCCGTGAGCCAGGAGCCAGCCTTTGAGGAAGAAATGGAGGCAGCCATGAAAGGGTTGGTCCAG
GAGCTTCGGAGAAGGATGAGCGTGATGGACAGTCATGCTGTTGCCCAGAGTGTTCTGACTCTCTGCGGTT
GTCACCTGCAGAGCTACATTCAGGCAAAGGAGGCCACTGCAGGGAAGAATGGTCCAGTTGAGCCTTCCCA
CCTCTGGGAGGCTTACTGCCGGGCGACTGCCCCACATCCTGCTGTGCACAGCCCCAGTGCTGAAGTCACC
TATACGCGTGGCGTTGTGAATTTGTTGCTTCAAGGGCTGGTGCCCAAGCCCCACTTGGAGACTCGTACCG
GACGCCATGTAGTGGTCGAACTCATCACATGCAATGTAATCTTACCACTGATCAGCAGGCTGTCAGATCC
TGACTGGATCCACCTTGTACTCGTGGGTATCTTTTCCAAGGCCAGAGATCCAGCACCCTGCCCAGCCAGT
GCCCCCGAACAGCCCTCAGTGCCGACATCTCTGCCACTGATTGCTGAGGTAGAGCAGCTTCCAGAAGGGA
GAGCTTCTCCAGTAGCAGCCCCAGTATTCCTAAGTTACAGTGAGCCAGAGGGTTCTGCAGGCCCCTCTCC
AGAGGTTGAAGAAGGCCACGAAGCTGTAGAGGGAGATTTGGGTGGGATGTGTGAAGAAAGAAAAGTAGGA
AACAACTCATCTCATTTCCTACAGCCAAATGTTCGAGGTCCCCTGTTCTTATGTGAAGACTCAGAGCTGG
AGTCTCCGCTGTCTGAACTGGGCAAAGAAACCATCATGCTCATGACTCCAGGCAGCTTTCTCTCTGACAG
GATTCAGGATGCCCTGTGTGCCCTAGAGAGTTCCCAGGCTCTGGAACCCAAAGATGGTGAGGCATCTGAA
GGAGCAGAGGCTGAGGAGGGTCCAGGGACAGAAACAGAGACAGGCCTGCCGGTCTCCACACTGAATTCCT
GCCCAGAGATCCATATTGACACAGCAGACAAGGAGATAGAACAAGGAGATGTTACCGCCTCTGTTACAGC
TTTGCTGGAGGGGCCAGAAAAGACCTGCCCCTCACGGCCGTCATGCTTAGAGAAGGATCTCACCAATGAT
GTGAGCTCCCTTGATCCTACTCTGCCACCAGTTCTGCTTTCCTCCTCTCCACCTGGTCCTCTCAGCTCAG
CCACCTTCAGCTTTGAGCCCCTAAGCAGTCCCGATGGTCCAGTTATCATCCAGAACCTTCGTATCACTGG
CACCATTACAGCCCGAGAGCACAGTGGCACTGGATTCCACCCATACACACTCTATACTGTGAAGTACGAG
ACAGCCCTTGACGGTGAAAACAGCAGCGGCCTGCAGCAGCTGGCCTACCACACTGTGAATCGTCGCTATC
GGGAGTTCTTGAATCTGCAGACCCGTCTGGAGGAGAAACCAGATCTACGAAAGTTCATCAAAAATGTGAA
GGGTCCTAAAAAGCTCTTTCCAGATCTTCCATTGGGAAACATGGACAGTGACAGAGTAGAAGCCCGTAAG
AGCCTCCTAGAATCATTCCTAAAGCAACTCTGTGCCATTCCGGAGATCGCTAACAGTGAGGAGGTGCAGG
AGTTCCTTGCTCTGAACACAGATGCTCGTATTGCCTTTGTCAAGAAACCATTTATGGTCTCTAGAATAGA
CAAGATGGTGGTGAGTGCCATTGTGGACACCTTGAAGACAGCGTTTCCTCGCTCTGAACCCCAGAGCCCC
ACAGAGGAGCTGAGTGAGGCCGAGACCGAAAGCAAGCCCCAGACAGAAGGCAAGAAGGCTAGCAAGTCTA
GGCTGAGGTTCTCATCCAGTAAAATTTCTCCAGCACTAAGTGTGACTGAAGCACAAGACAAGATTCTTTA
TTGTCTCCAGGAAGGCAATGTGGAGTCTGAGACTCTATCCATGTCTGCGATGGAATCTTTTATTGAAAAA
CAGACAAAGTTACTGGAAATGCAGCCAACAAAAGCCCCAGAAAAAGATCCTGAACAACCTCCCAAAGGAC
GTGTGGACAGTTGCGTGTCAGATGCAGCCGTGCCAGCCCAAGACCCCAGCAACAGCGATCCAGGAACAGA
GACAGAGTTAGCTGACACAGCCCTGGATCTGCTCCTCTTGCTACTAACAGAACAGTGGAAATGGCTATGT
ACCGAAAACATGCAAAAGTTTCTTCGTCTTATCTTTGGGACCCTAGTTCAAAGGTGGCTAGAGGTGCAGG
TAGCTAATTTAACAAGTCCACAGCGCTGGGTGCAGTACCTCCTGCTTCTTCAGGAGTCCATCTGGCCTGG
TGGAGTTTTGCCTAAGTTTCCACGGCCCGTAAGGACCCAAGAGCAGAAACTGGCTGCTGAGAAACAGGCT
TTGCAGAGCCTGATGGGAGTCCTCCCAGATCTCGTAGTAGAAATTCTTGGGGTGAACAAATGCCGGCTGA
GCTGGGGTCTAGTCCTGGAGTCACTACAACAACCCCTCATCAACAGGCATTTGATTTACTGCCTTGGGGA
CATCATCCTGGAATTCTTGGATCTCAGTGCCTCTGTTGAGGAGTCTGCTGCTACCACCTCTGCCTCAGAT
ACCCCAGGCAACTCTAAGAGGATGGGTGTCTCCTCTTAG

Translation (992 aa):
MKTETVPPFQETPAGSSCHLNNLLSSRKLMAVGVLLGWLLVIHLLVNVWLLCLLSALLVVLGGWLGSSLA
GVASGRLHLERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRSVSQEPAFEEEMEAAMKGLVQ
ELRRRMSVMDSHAVAQSVLTLCGCHLQSYIQAKEATAGKNGPVEPSHLWEAYCRATAPHPAVHSPSAEVT
YTRGVVNLLLQGLVPKPHLETRTGRHVVVELITCNVILPLISRLSDPDWIHLVLVGIFSKARDPAPCPAS
APEQPSVPTSLPLIAEVEQLPEGRASPVAAPVFLSYSEPEGSAGPSPEVEEGHEAVEGDLGGMCEERKVG
NNSSHFLQPNVRGPLFLCEDSELESPLSELGKETIMLMTPGSFLSDRIQDALCALESSQALEPKDGEASE
GAEAEEGPGTETETGLPVSTLNSCPEIHIDTADKEIEQGDVTASVTALLEGPEKTCPSRPSCLEKDLTND
VSSLDPTLPPVLLSSSPPGPLSSATFSFEPLSSPDGPVIIQNLRITGTITAREHSGTGFHPYTLYTVKYE
TALDGENSSGLQQLAYHTVNRRYREFLNLQTRLEEKPDLRKFIKNVKGPKKLFPDLPLGNMDSDRVEARK
SLLESFLKQLCAIPEIANSEEVQEFLALNTDARIAFVKKPFMVSRIDKMVVSAIVDTLKTAFPRSEPQSP
TEELSEAETESKPQTEGKKASKSRLRFSSSKISPALSVTEAQDKILYCLQEGNVESETLSMSAMESFIEK
QTKLLEMQPTKAPEKDPEQPPKGRVDSCVSDAAVPAQDPSNSDPGTETELADTALDLLLLLLTEQWKWLC
TENMQKFLRLIFGTLVQRWLEVQVANLTSPQRWVQYLLLLQESIWPGGVLPKFPRPVRTQEQKLAAEKQA
LQSLMGVLPDLVVEILGVNKCRLSWGLVLESLQQPLINRHLIYCLGDIILEFLDLSASVEESAATTSASD
TPGNSKRMGVSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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