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Report for CCDS31949.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31949.1 Public Homo sapiens 13 NUP58 24 110 108 CCDS HistoryNCBI Gene:9818Re-query CCDS DB by CCDS ID:31949.1Re-query CCDS DB by GeneID:9818See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31949.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381718.8 ENSP00000371137.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381718.8Link to Ensembl Protein Viewer:ENSP00000371137.3Re-query CCDS DB by Nucleotide ID:ENST00000381718Re-query CCDS DB by Protein ID:ENSP00000371137
Original member Current member NCBI NM_001008564.2 NP_001008564.1 Accepted alive Link to Nucleotide Sequence:NM_001008564.2Link to Protein Sequence:NP_001008564.1Re-query CCDS DB by Nucleotide ID:NM_001008564Re-query CCDS DB by Protein ID:NP_001008564Link to BLAST:NP_001008564.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008564.1 587 Q9BVL2-3 587 100% 0 0

Chromosomal Locations for CCDS 31949.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 25301774 25301880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25307806 25307948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25312883 25313032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25313614 25313751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25315357 25315467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25319326 25319350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25320530 25320595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25320919 25321093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25324989 25325068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25326916 25327034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25327430 25327512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25331357 25331558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25336936 25337034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25338636 25338731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25339965 25340134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1764 nt):
ATGTCCACAGGGTTCTCCTTCGGGTCCGGGACTCTGGGCTCCACCACCGTGGCCGCCGGCGGGACCAGCA
CAGGCGGCGTTTTCTCCTTCGGAACGGGAGCGTCTAGCAACCCTTCTGTGGGGCTCAATTTTGGAAATCT
TGGAAGTACTTCAACTCCAGCAACTACATCTGCTCCTTCAAGTGGTTTTGGAACCGGGCTCTTTGGATCT
AAACCTGCCACTGGGTTCACTCTAGGAGGAACAAATACAGGAACGCCAGCCACTACATCTGCAGCTACAA
CAGGCTTCAGTTTAGGATTCAATAAACCTGCAGCATCTGCCACACCATTTGCTCTACCTATTACCTCTAC
CTCAGCTAGCGGTCTGACTCTTTCGTCTGCTCTGACATCAACTCCAGCAGCATCCACAGGATTTACTCTA
AATAATTTGGGTGGGACAACAGCCACAACTACAACTGCATCAACAGGCCTCTCTTTAGGGGGAGCCTTAG
CTGGTTTGGGAGGTTCACTTTTCCAGAGTACAAACACAGGAACATCAGGACTTGGACAGAATGCTTTAGG
GTTGACTTTGGGAACTACAGCAGCTACTTCAACTGCAGGCAATGAAGGCCTTGGTGGTATAGATTTCAGT
AGCTCCTCAGATAAAAAGAGTGATAAAACGGGAACAAGACCAGAGGATAGTAAAGCTCTGAAGGATGAAA
ATCTACCTCCTGTCATCTGCCAGGATGTTGAAAATCTCCAGAAATTTGTGAAGGAGCAGAAACAAGTTCA
AGAAGAAATTAGTAGAATGTCTTCAAAAGCAATGCTTAAGGTACAAGAAGATATTAAAGCTCTGAAGCAG
CTCCTGTCGTTGGCTGCCAATGGAATACAGAGAAACACTCTCAACATTGACAAATTGAAAATAGAAACTG
CTCAGGAGTTGAAGAATGCTGAAATAGCTTTAAGAACCCAGAAGACACCACCTGGACTTCAACATGAATA
TGCAGCTCCTGCTGACTACTTCAGAATCTTGGTTCAGCAATTTGAGGTACAGCTTCAGCAGTACAGGCAG
CAGATTGAAGAACTAGAAAACCATCTTGCCACTCAAGCAAATAATTCACATATAACCCCTCAAGATTTGT
CAATGGCTATGCAGAAAATTTATCAAACATTTGTAGCTTTAGCGGCACAACTTCAGTCTATTCATGAAAA
TGTAAAGGTTCTGAAAGAACAGTACCTTGGCTACAGGAAAATGTTCTTGGGAGATGCTGTTGATGTGTTT
GAAACAAGGCGAGCAGAAGCCAAGAAGTGGCAGAACACACCCAGAGTTACTACTGGACCCACTCCTTTCA
GCACCATGCCAAACGCAGCAGCCGTTGCCATGGCTGCAACACTTACACAGCAGCAACAGCCTGCTACAGG
GCCACAGCCATCTCTGGGAGTTAGTTTTGGAACGCCATTCGGCTCAGGTATTGGCACTGGCTTGCAATCA
AGTGGCTTAGGTTCTTCAAACCTTGGAGGATTTGGAACTAGCTCTGGTTTTGGATGCAGCACCACAGGGG
CCTCCACATTTGGATTTGGAACAACAAATAAACCCTCAGGAAGTCTTAGTGCAGGCTTTGGCAGCTCAAG
TACATCTGGGTTTAACTTCAGCAATCCTGGCATCACGGCATCAGCTGGTTTGACTTTTGGGGTGTCCAAT
CCTGCCTCTGCAGGTTTTGGAACAGGAGGACAACTCCTTCAGTTGAAGAAACCTCCAGCTGGAAACAAAA
GAGGAAAAAGATAA

Translation (587 aa):
MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPSSGFGTGLFGS
KPATGFTLGGTNTGTPATTSAATTGFSLGFNKPAASATPFALPITSTSASGLTLSSALTSTPAASTGFTL
NNLGGTTATTTTASTGLSLGGALAGLGGSLFQSTNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFS
SSSDKKSDKTGTRPEDSKALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQ
LLSLAANGIQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQ
QIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMFLGDAVDVF
ETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGPQPSLGVSFGTPFGSGIGTGLQS
SGLGSSNLGGFGTSSGFGCSTTGASTFGFGTTNKPSGSLSAGFGSSSTSGFNFSNPGITASAGLTFGVSN
PASAGFGTGGQLLQLKKPPAGNKRGKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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