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Report for CCDS31999.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
31999.2 |
Public |
Homo sapiens |
13 |
IPO5 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:3843](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:31999.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:3843](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 13 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 31999.1 |
The coding region has been updated to shorten the N-terminus to one that is more supported by available conservation data or publications. |
Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)
Attributes |
CDS uses downstream AUG |
Sequence IDs included in CCDS 31999.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000357602.7 |
ENSP00000350219.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000357602.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000350219.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000357602](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000350219](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000490680.5 |
ENSP00000418393.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000490680.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000418393.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000490680](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000418393](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000651721.2 |
ENSP00000499125.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000651721.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000499125.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000651721](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000499125](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_002271.6 |
NP_002262.4 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_002271.6](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_002262.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_002271](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_002262](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_002262.4](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_002262.4 |
1097 |
O00410-1 |
1097 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 31999.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3294 nt): ATGGCGGCGGCCGCGGCGGAGCAGCAACAGTTCTACCTGCTCCTGGGAAACCTGCTCAGCCCCGACAATG TGGTCCGGAAACAGGCAGAGGAAACCTATGAGAATATCCCAGGCCAGTCAAAGATCACATTCCTCTTACA AGCCATCAGAAATACAACAGCTGCTGAAGAGGCTAGACAAATGGCCGCCGTTCTCCTAAGACGTCTCTTG TCCTCTGCATTTGATGAAGTCTATCCAGCACTTCCCTCTGATGTTCAGACTGCCATCAAGAGTGAGCTAC TCATGATTATTCAGATGGAAACACAATCTAGCATGAGGAAAAAAGTTTGTGATATTGCGGCAGAACTGGC CAGGAATTTAATAGATGAGGATGGCAATAACCAGTGGCCCGAAGGTTTGAAGTTCCTTTTTGATTCAGTC AGCTCTCAAAATGTGGGACTGCGGGAAGCTGCCCTTCACATTTTCTGGAACTTTCCTGGAATTTTTGGGA ACCAGCAACAACACTATTTAGATGTCATCAAACGAATGTTAGTTCAGTGTATGCAAGATCAGGAACACCC GTCGATCAGGACGTTATCTGCTAGAGCTACAGCTGCATTTATACTTGCAAATGAGCATAATGTTGCTCTG TTCAAACATTTTGCAGACTTGCTACCGGGATTCCTACAGGCGGTAAATGACTCGTGCTACCAGAATGATG ATTCTGTCCTAAAATCCCTCGTTGAGATTGCAGATACTGTTCCAAAGTATTTGCGTCCTCACTTGGAAGC AACTCTACAGCTAAGTCTAAAGTTGTGTGGAGACACTAGCCTCAACAATATGCAACGCCAGCTTGCCCTT GAAGTGATCGTCACCCTCTCTGAGACTGCAGCTGCTATGTTAAGAAAACATACCAATATTGTTGCACAGA CTATTCCTCAGATGTTAGCAATGATGGTTGATTTGGAAGAAGATGAGGACTGGGCAAATGCAGATGAACT AGAAGATGATGATTTTGACAGCAATGCAGTTGCAGGCGAGAGTGCTCTAGATCGAATGGCTTGCGGACTT GGTGGAAAGCTCGTTCTGCCGATGATCAAGGAACACATTATGCAAATGCTTCAAAATCCTGACTGGAAAT ACCGGCATGCAGGATTGATGGCCTTATCTGCCATTGGTGAAGGGTGCCACCAGCAAATGGAAGGAATTCT AAATGAGATCGTAAATTTTGTTTTACTTTTTCTCCAGGATCCTCATCCAAGAGTAAGGTATGCAGCCTGT AATGCCGTGGGACAGATGGCTACAGATTTTGCACCTGGTTTCCAAAAGAAATTTCATGAGAAGGTGATTG CAGCTCTGCTGCAGACCATGGAAGACCAAGGCAATCAACGTGTGCAGGCCCATGCAGCTGCTGCCCTCAT TAACTTTACTGAAGACTGTCCCAAGTCACTACTTATTCCATACTTGGATAATTTGGTGAAACATCTGCAT TCCATTATGGTACTGAAGCTTCAAGAGCTGATTCAGAAAGGCACCAAGTTAGTTTTGGAACAAGTTGTGA CATCCATTGCATCAGTTGCCGATACTGCAGAAGAAAAATTTGTCCCCTACTATGATTTATTTATGCCATC ACTGAAGCACATCGTTGAGAATGCGGTTCAAAAAGAACTGAGACTTCTGAGAGGAAAAACTATTGAATGC ATTAGCCTCATTGGTCTGGCTGTTGGGAAGGAAAAATTCATGCAGGATGCATCAGATGTGATGCAGCTTT TGTTAAAGACCCAGACAGACTTCAATGATATGGAAGATGATGATCCTCAGATCTCTTACATGATCTCAGC ATGGGCCAGAATGTGCAAAATCCTTGGAAAAGAATTTCAGCAATACCTTCCAGTGGTTATGGGGCCTTTA ATGAAGACGGCTTCAATTAAGCCCGAAGTAGCCCTTTTAGATACCCAAGACATGGAGAATATGAGTGATG ATGATGGTTGGGAATTTGTGAACCTTGGAGATCAGCAAAGCTTTGGTATTAAAACTGCAGGACTAGAAGA AAAATCAACTGCTTGCCAGATGTTGGTTTGCTATGCTAAGGAGTTAAAGGAAGGCTTTGTGGAGTACACC GAACAGGTTGTCAAACTGATGGTCCCTTTACTGAAATTTTATTTCCACGATGGTGTTCGAGTGGCAGCAG CGGAATCCATGCCTCTTCTCCTGGAGTGTGCAAGAGTCCGTGGTCCTGAGTATCTCACACAGATGTGGCA TTTTATGTGTGATGCTCTAATTAAGGCCATTGGTACAGAACCAGATTCAGACGTCCTCTCAGAAATAATG CATTCTTTTGCAAAGTGCATTGAAGTAATGGGAGATGGATGCCTTAATAATGAACACTTTGAAGAACTGG GAGGTATATTGAAAGCAAAGCTTGAAGAACATTTTAAAAATCAAGAATTACGACAAGTTAAAAGACAAGA TGAAGACTATGATGAACAGGTCGAAGAGTCACTACAAGATGAGGATGATAATGATGTTTATATTCTGACC AAAGTGTCAGATATTTTACACTCAATATTCAGTAGCTACAAAGAAAAGGTGTTACCATGGTTTGAACAGC TGCTTCCATTAATTGTCAACCTCATTTGTCCACATAGACCATGGCCAGACAGACAATGGGGATTATGCAT CTTTGATGATGTCATAGAACACTGTAGTCCAGCCTCATTTAAATACGCAGAATATTTCTTAAGACCAATG CTCCAATATGTATGTGACAACAGCCCAGAAGTCAGGCAAGCAGCTGCATATGGCCTGGGAGTCATGGCAC AGTACGGTGGAGATAATTATCGCCCTTTTTGTACAGAAGCACTTCCCCTGCTGGTAAGAGTTATTCAGTC TGCGGATTCTAAGACCAAAGAAAATGTCAATGCTACAGAGAACTGCATCTCAGCAGTAGGGAAAATCATG AAGTTCAAGCCTGACTGTGTAAACGTTGAAGAGGTCCTTCCACACTGGTTGTCTTGGCTTCCACTACATG AAGATAAAGAAGAAGCTGTTCAGACTTTCAATTATCTGTGTGACCTGATTGAAAGTAATCATCCAATTGT TCTTGGCCCAAACAATACCAATCTGCCCAAAATATTTAGTATAATTGCGGAAGGAGAAATGCACGAGGCA ATTAAACATGAAGATCCTTGTGCCAAACGTCTGGCCAATGTCGTTCGCCAAGTACAGACTTCTGGAGGAC TGTGGACTGAGTGCATAGCACAGCTCAGTCCTGAGCAGCAGGCCGCCATTCAGGAGCTCCTGAACTCTGC GTGA
Translation (1097 aa): MAAAAAEQQQFYLLLGNLLSPDNVVRKQAEETYENIPGQSKITFLLQAIRNTTAAEEARQMAAVLLRRLL SSAFDEVYPALPSDVQTAIKSELLMIIQMETQSSMRKKVCDIAAELARNLIDEDGNNQWPEGLKFLFDSV SSQNVGLREAALHIFWNFPGIFGNQQQHYLDVIKRMLVQCMQDQEHPSIRTLSARATAAFILANEHNVAL FKHFADLLPGFLQAVNDSCYQNDDSVLKSLVEIADTVPKYLRPHLEATLQLSLKLCGDTSLNNMQRQLAL EVIVTLSETAAAMLRKHTNIVAQTIPQMLAMMVDLEEDEDWANADELEDDDFDSNAVAGESALDRMACGL GGKLVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPRVRYAAC NAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTEDCPKSLLIPYLDNLVKHLH SIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDLFMPSLKHIVENAVQKELRLLRGKTIEC ISLIGLAVGKEKFMQDASDVMQLLLKTQTDFNDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPL MKTASIKPEVALLDTQDMENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYT EQVVKLMVPLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSEIM HSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESLQDEDDNDVYILT KVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIFDDVIEHCSPASFKYAEYFLRPM LQYVCDNSPEVRQAAAYGLGVMAQYGGDNYRPFCTEALPLLVRVIQSADSKTKENVNATENCISAVGKIM KFKPDCVNVEEVLPHWLSWLPLHEDKEEAVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEA IKHEDPCAKRLANVVRQVQTSGGLWTECIAQLSPEQQAAIQELLNSA
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