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Report for CCDS3203.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3203.1 Public Homo sapiens 3 SERPINI1 24 110 108 CCDS HistoryNCBI Gene:5274Re-query CCDS DB by CCDS ID:3203.1Re-query CCDS DB by GeneID:5274See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3203.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295777.9 ENSP00000295777.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000295777.9Link to Ensembl Protein Viewer:ENSP00000295777.5Re-query CCDS DB by Nucleotide ID:ENST00000295777Re-query CCDS DB by Protein ID:ENSP00000295777
Original member Current member EBI ENST00000446050.7 ENSP00000397373.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000446050.7Link to Ensembl Protein Viewer:ENSP00000397373.2Re-query CCDS DB by Nucleotide ID:ENST00000446050Re-query CCDS DB by Protein ID:ENSP00000397373
Original member Current member NCBI NM_001122752.2 NP_001116224.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001122752.2Link to Protein Sequence:NP_001116224.1Re-query CCDS DB by Nucleotide ID:NM_001122752Re-query CCDS DB by Protein ID:NP_001116224Link to BLAST:NP_001116224.1
Original member Current member NCBI NM_005025.5 NP_005016.1 Accepted alive Link to Nucleotide Sequence:NM_005025.5Link to Protein Sequence:NP_005016.1Re-query CCDS DB by Nucleotide ID:NM_005025Re-query CCDS DB by Protein ID:NP_005016Link to BLAST:NP_005016.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116224.1 410 Q99574 410 100% 0 0
NP_005016.1 410 Q99574 410 100% 0 0

Chromosomal Locations for CCDS 3203.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 167789129 167789378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167790372 167790602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167792590 167792784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167794620 167794824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167807244 167807341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167822986 167823072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167824473 167824562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167825247 167825323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGGCTTTCCTTGGACTCTTCTCTTTGCTGGTTCTGCAAAGTATGGCTACAGGGGCCACTTTCCCTGAGG
AAGCCATTGCTGACTTGTCAGTGAATATGTATAATCGTCTTAGAGCCACTGGTGAAGATGAAAATATTCT
CTTCTCTCCATTGAGTATTGCTCTTGCAATGGGAATGATGGAACTTGGGGCCCAAGGATCTACCCAGAAA
GAAATCCGCCACTCAATGGGATATGACAGCCTAAAAAATGGTGAAGAATTTTCTTTCTTGAAGGAGTTTT
CAAACATGGTAACTGCTAAAGAGAGCCAATATGTGATGAAAATTGCCAATTCCTTGTTTGTGCAAAATGG
ATTTCATGTCAATGAGGAGTTTTTGCAAATGATGAAAAAATATTTTAATGCAGCAGTAAATCATGTGGAC
TTCAGTCAAAATGTAGCCGTGGCCAACTACATCAATAAGTGGGTGGAGAATAACACAAACAATCTGGTGA
AAGATTTGGTATCCCCAAGGGATTTTGATGCTGCCACTTATCTGGCCCTCATTAATGCTGTCTATTTCAA
GGGGAACTGGAAGTCGCAGTTTAGGCCTGAAAATACTAGAACCTTTTCTTTCACTAAAGATGATGAAAGT
GAAGTCCAAATTCCAATGATGTATCAGCAAGGAGAATTTTATTATGGGGAATTTAGTGATGGCTCCAATG
AAGCTGGTGGTATCTACCAAGTCCTAGAAATACCATATGAAGGAGATGAAATAAGCATGATGCTGGTGCT
GTCCAGACAGGAAGTTCCTCTTGCTACTCTGGAGCCATTAGTCAAAGCACAGCTGGTTGAAGAATGGGCA
AACTCTGTGAAGAAGCAAAAAGTAGAAGTATACCTGCCCAGGTTCACAGTGGAACAGGAAATTGATTTAA
AAGATGTTTTGAAGGCTCTTGGAATAACTGAAATTTTCATCAAAGATGCAAATTTGACAGGCCTCTCTGA
TAATAAGGAGATTTTTCTTTCCAAAGCAATTCACAAGTCCTTCCTAGAGGTTAATGAAGAAGGCTCAGAA
GCTGCTGCTGTCTCAGGAATGATTGCAATTAGTAGGATGGCTGTGCTGTATCCTCAAGTTATTGTCGACC
ATCCATTTTTCTTTCTTATCAGAAACAGGAGAACTGGTACAATTCTATTCATGGGACGAGTCATGCATCC
TGAAACAATGAACACAAGTGGACATGATTTCGAAGAACTTTAA

Translation (410 aa):
MAFLGLFSLLVLQSMATGATFPEEAIADLSVNMYNRLRATGEDENILFSPLSIALAMGMMELGAQGSTQK
EIRHSMGYDSLKNGEEFSFLKEFSNMVTAKESQYVMKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVD
FSQNVAVANYINKWVENNTNNLVKDLVSPRDFDAATYLALINAVYFKGNWKSQFRPENTRTFSFTKDDES
EVQIPMMYQQGEFYYGEFSDGSNEAGGIYQVLEIPYEGDEISMMLVLSRQEVPLATLEPLVKAQLVEEWA
NSVKKQKVEVYLPRFTVEQEIDLKDVLKALGITEIFIKDANLTGLSDNKEIFLSKAIHKSFLEVNEEGSE
AAAVSGMIAISRMAVLYPQVIVDHPFFFLIRNRRTGTILFMGRVMHPETMNTSGHDFEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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