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Report for CCDS32077.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32077.1 Public Homo sapiens 14 ATL1 24 110 108 CCDS HistoryNCBI Gene:51062Re-query CCDS DB by CCDS ID:32077.1Re-query CCDS DB by GeneID:51062See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32077.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000441560.6 ENSP00000413675.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000441560.6Link to Ensembl Protein Viewer:ENSP00000413675.2Re-query CCDS DB by Nucleotide ID:ENST00000441560Re-query CCDS DB by Protein ID:ENSP00000413675
Original member Current member EBI ENST00000553509.2 ENSP00000450989.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000553509.2Link to Ensembl Protein Viewer:ENSP00000450989.2Re-query CCDS DB by Nucleotide ID:ENST00000553509Re-query CCDS DB by Protein ID:ENSP00000450989
Original member Current member EBI ENST00000556478.3 ENSP00000501428.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000556478.3Link to Ensembl Protein Viewer:ENSP00000501428.2Re-query CCDS DB by Nucleotide ID:ENST00000556478Re-query CCDS DB by Protein ID:ENSP00000501428
Original member Current member NCBI NM_001127713.1 NP_001121185.1 Accepted alive Link to Nucleotide Sequence:NM_001127713.1Link to Protein Sequence:NP_001121185.1Re-query CCDS DB by Nucleotide ID:NM_001127713Re-query CCDS DB by Protein ID:NP_001121185Link to BLAST:NP_001121185.1
Original member Current member NCBI NM_181598.4 NP_853629.2 Accepted alive Link to Nucleotide Sequence:NM_181598.4Link to Protein Sequence:NP_853629.2Re-query CCDS DB by Nucleotide ID:NM_181598Re-query CCDS DB by Protein ID:NP_853629Link to BLAST:NP_853629.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121185.1 553 Q8WXF7-2 553 100% 0 0
NP_853629.2 553 Q8WXF7-2 553 100% 0 0

Chromosomal Locations for CCDS 32077.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 50560266 50560299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50587831 50588078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50590941 50591075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50591535 50591639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50593846 50593896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50595576 50595632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50613259 50613351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50614373 50614511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50620599 50620726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50621843 50621899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50623177 50623248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50628031 50628462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50632229 50632339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGGCCAAGAACCGCAGGGACAGAAACAGTTGGGGTGGATTTTCGGAAAAGACATATGAATGGAGCTCAG
AAGAGGAGGAGCCAGTGAAAAAGGCAGGACCAGTCCAAGTCCTCATTGTCAAAGATGACCATTCCTTTGA
GTTAGATGAAACTGCATTAAATCGGATCCTTCTCTCGGAGGCTGTCAGAGACAAGGAGGTTGTTGCTGTA
TCTGTTGCTGGAGCATTTAGAAAAGGAAAATCATTCCTGATGGACTTCATGTTGAGATACATGTACAACC
AGGAATCAGTTGATTGGGTTGGAGACTACAATGAACCATTGACTGGTTTTTCATGGAGAGGTGGATCTGA
GCGAGAGACCACAGGAATTCAGATATGGAGTGAAATCTTCCTTATCAATAAACCTGATGGTAAAAAGGTT
GCAGTGTTATTGATGGATACTCAGGGAACCTTTGATAGTCAGTCAACTTTGAGAGATTCAGCCACAGTAT
TTGCCCTTAGCACAATGATCAGCTCAATACAGGTATATAACTTATCCCAAAATGTCCAGGAGGATGATCT
TCAGCACCTCCAGCTTTTCACTGAGTATGGCAGACTGGCAATGGAGGAAACATTCCTGAAGCCATTTCAG
AGTCTGATATTTCTTGTTCGAGACTGGAGTTTCCCATACGAATTTTCATATGGAGCCGATGGTGGTGCCA
AATTCTTGGAAAAACGCCTCAAGGTCTCAGGGAACCAGCATGAAGAACTACAGAACGTCAGAAAACACAT
CCATTCCTGTTTCACCAACATTTCCTGTTTTCTGCTACCTCATCCTGGCTTAAAAGTAGCTACCAATCCA
AACTTTGATGGAAAATTGAAAGAAATAGATGATGAATTCATCAAAAACTTGAAAATACTGATTCCTTGGC
TACTTAGTCCCGAGAGCCTAGATATTAAAGAGATCAATGGGAATAAAATCACCTGCCGGGGTCTGGTGGA
GTACTTCAAGGCTTATATAAAGATCTATCAAGGTGAAGAATTACCACATCCCAAATCCATGTTACAGGCC
ACAGCAGAAGCTAACAATTTAGCAGCCGTGGCAACTGCCAAGGACACATACAACAAAAAAATGGAAGAGA
TTTGTGGTGGTGACAAACCATTTCTGGCCCCAAATGACTTGCAGACCAAACACCTGCAACTTAAGGAAGA
ATCTGTGAAGCTATTCCGAGGGGTGAAGAAGATGGGTGGGGAAGAATTTAGCCGGCGTTACCTGCAGCAG
TTGGAGAGTGAAATAGATGAACTTTACATCCAATATATCAAGCACAATGATAGCAAAAATATCTTCCATG
CAGCTCGTACCCCAGCCACACTGTTTGTAGTCATCTTTATCACATATGTGATTGCTGGTGTGACTGGATT
CATTGGTTTGGACATCATAGCTAGCCTATGCAATATGATAATGGGACTGACCCTTATCACCCTGTGCACT
TGGGCATATATCCGGTACTCTGGAGAATACCGAGAGCTGGGAGCTGTAATAGACCAGGTGGCTGCAGCTC
TGTGGGACCAGGCTTTGTACAAGCTTTACAGTGCAGCAGCAACCCACAGACATCTGTATCATCAAGCTTT
CCCTACACCAAAGTCGGAATCTACTGAACAATCAGAAAAGAAAAAAATGTAA

Translation (553 aa):
MAKNRRDRNSWGGFSEKTYEWSSEEEEPVKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAV
SVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKV
AVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQ
SLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISCFLLPHPGLKVATNP
NFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQA
TAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQ
LESEIDELYIQYIKHNDSKNIFHAARTPATLFVVIFITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCT
WAYIRYSGEYRELGAVIDQVAAALWDQALYKLYSAAATHRHLYHQAFPTPKSESTEQSEKKKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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