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Report for CCDS3222.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3222.1 Public Homo sapiens 3 NLGN1 24 110 108 CCDS HistoryNCBI Gene:22871Re-query CCDS DB by CCDS ID:3222.1Re-query CCDS DB by GeneID:22871See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3222.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361589.8 ENSP00000354541.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361589.8Link to Ensembl Protein Viewer:ENSP00000354541.4Re-query CCDS DB by Nucleotide ID:ENST00000361589Re-query CCDS DB by Protein ID:ENSP00000354541
Original member Current member EBI ENST00000457714.5 ENSP00000392500.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000457714.5Link to Ensembl Protein Viewer:ENSP00000392500.1Re-query CCDS DB by Nucleotide ID:ENST00000457714Re-query CCDS DB by Protein ID:ENSP00000392500
Original member Current member NCBI NM_001365929.2 NP_001352858.1 Accepted alive Link to Nucleotide Sequence:NM_001365929.2Link to Protein Sequence:NP_001352858.1Re-query CCDS DB by Nucleotide ID:NM_001365929Re-query CCDS DB by Protein ID:NP_001352858Link to BLAST:NP_001352858.1
Original member Current member NCBI NM_001365930.2 NP_001352859.1 Accepted alive Link to Nucleotide Sequence:NM_001365930.2Link to Protein Sequence:NP_001352859.1Re-query CCDS DB by Nucleotide ID:NM_001365930Re-query CCDS DB by Protein ID:NP_001352859Link to BLAST:NP_001352859.1
Original member Current member NCBI NM_001365931.2 NP_001352860.1 Accepted alive Link to Nucleotide Sequence:NM_001365931.2Link to Protein Sequence:NP_001352860.1Re-query CCDS DB by Nucleotide ID:NM_001365931Re-query CCDS DB by Protein ID:NP_001352860Link to BLAST:NP_001352860.1
Original member Current member NCBI NM_001365932.2 NP_001352861.1 Accepted alive Link to Nucleotide Sequence:NM_001365932.2Link to Protein Sequence:NP_001352861.1Re-query CCDS DB by Nucleotide ID:NM_001365932Re-query CCDS DB by Protein ID:NP_001352861Link to BLAST:NP_001352861.1
Original member Current member NCBI NM_001365933.2 NP_001352862.1 Accepted alive Link to Nucleotide Sequence:NM_001365933.2Link to Protein Sequence:NP_001352862.1Re-query CCDS DB by Nucleotide ID:NM_001365933Re-query CCDS DB by Protein ID:NP_001352862Link to BLAST:NP_001352862.1
Original member Current member NCBI NM_014932.5 NP_055747.1 Accepted alive Link to Nucleotide Sequence:NM_014932.5Link to Protein Sequence:NP_055747.1Re-query CCDS DB by Nucleotide ID:NM_014932Re-query CCDS DB by Protein ID:NP_055747Link to BLAST:NP_055747.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001352858.1 823 Q8N2Q7-2 823 100% 0 0
NP_001352859.1 823 Q8N2Q7-2 823 100% 0 0
NP_001352860.1 823 Q8N2Q7-2 823 100% 0 0
NP_001352861.1 823 Q8N2Q7-2 823 100% 0 0
NP_001352862.1 823 Q8N2Q7-2 823 100% 0 0
NP_055747.1 823 Q8N2Q7-2 823 100% 0 0

Chromosomal Locations for CCDS 3222.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 173604599 173605091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 173807680 173807832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 174275315 174275527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 174278861 174279650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 174280481 174281303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2472 nt):
ATGGCACTGCCCAGATGCACGTGGCCAAATTATGTTTGGAGAGCAGTGATGGCATGCTTGGTACACCGGG
GATTGGGTGCCCCATTGACTCTCTGTATGTTGGGATGTTTGCTTCAGGCTGGCCATGTGCTATCACAAAA
ATTGGATGATGTGGACCCACTGGTGGCTACCAACTTTGGAAAGATAAGAGGGATTAAGAAGGAACTCAAT
AATGAAATTTTGGGGCCTGTTATTCAATTTCTTGGGGTTCCATATGCAGCCCCACCAACAGGGGAACGTC
GTTTTCAGCCTCCAGAACCACCATCTCCCTGGTCAGATATCAGAAATGCCACTCAATTTGCTCCTGTGTG
TCCCCAGAATATCATTGATGGCAGATTGCCAGAAGTCATGCTTCCTGTGTGGTTTACTAATAACTTGGAT
GTGGTTTCATCATATGTGCAAGACCAGAGCGAAGACTGCCTATATTTAAATATATATGTCCCGACTGAGG
ATGATATTCGGGACAGTGGGGGTCCCAAACCAGTGATGGTGTATATCCATGGTGGCTCATATATGGAAGG
TACTGGAAATTTATATGATGGAAGTGTCTTGGCAAGTTATGGCAATGTGATCGTCATCACAGTCAACTAT
CGACTTGGAGTACTCGGTTTCTTGAGTACAGGCGATCAGGCTGCAAAGGGGAACTATGGACTCCTTGATC
TCATACAAGCTTTAAGATGGACTAGTGAAAACATTGGATTCTTTGGTGGTGACCCCTTAAGAATCACTGT
TTTTGGATCTGGTGCTGGGGGTTCATGTGTCAACCTGCTGACTTTATCCCATTATTCTGAAGGTAACCGT
TGGAGCAATTCAACCAAAGGACTTTTTCAACGAGCAATAGCTCAAAGTGGAACAGCCCTTTCCAGCTGGG
CTGTTAGTTTTCAACCTGCAAAATATGCTAGAATGTTGGCCACAAAAGTTGGTTGCAATGTTTCAGATAC
AGTAGAGTTAGTGGAATGCCTACAGAAGAAGCCTTACAAAGAACTTGTTGACCAAGATATTCAACCAGCT
CGATACCACATAGCCTTTGGACCTGTGATTGATGGTGATGTAATACCAGACGACCCCCAGATATTGATGG
AGCAAGGAGAGTTTCTCAACTATGATATAATGTTAGGAGTGAACCAAGGGGAAGGGTTAAAATTTGTTGA
AAATATAGTAGATAGCGATGATGGTATATCAGCTAGTGATTTTGACTTTGCTGTTTCAAATTTTGTTGAT
AATTTATATGGATATCCTGAAGGCAAAGATGTTTTGAGAGAAACCATTAAGTTCATGTATACTGACTGGG
CTGACCGTCATAACCCTGAAACCAGAAGAAAGACATTACTGGCTTTGTTTACGGACCATCAGTGGGTGGC
ACCAGCTGTAGCCACAGCGGATCTTCACTCAAACTTTGGTTCACCTACGTACTTCTATGCCTTTTACCAT
CATTGCCAAACAGATCAGGTTCCAGCTTGGGCTGATGCAGCCCACGGAGACGAGGTTCCCTATGTACTGG
GAATCCCCATGATTGGCCCTACAGAGTTATTTCCTTGCAATTTCTCCAAAAATGATGTGATGCTGAGTGC
AGTTGTAATGACATACTGGACAAATTTTGCTAAAACTGGTGACCCAAATCAACCAGTCCCTCAAGACACG
AAATTCATTCATACCAAACCCAACCGTTTTGAAGAAGTAGCATGGACCAGATATTCCCAGAAAGACCAAC
TTTATCTCCATATTGGATTAAAACCAAGAGTTAAAGAACATTACAGAGCCAATAAGGTGAACCTCTGGTT
GGAGTTGGTACCTCATCTGCATAATCTCAATGACATTTCTCAGTATACCTCTACAACAACTAAAGTGCCA
TCAACTGACATCACTTTCAGACCTACGAGAAAAAATTCTGTACCTGTCACGTCAGCCTTTCCCACTGCCA
AGCAGGATGATCCCAAACAACAACCAAGTCCATTTTCAGTGGATCAAAGGGACTACTCAACAGAGCTGAG
TGTCACTATTGCAGTTGGAGCATCACTGCTGTTTCTGAACATCTTGGCCTTTGCAGCCCTGTACTACAAA
AAGGATAAGAGGAGACATGATGTTCACAGGAGATGCAGCCCTCAGCGCACTACTACCAATGATCTAACCC
ATGCACAAGAAGAGGAAATCATGTCCCTCCAAATGAAGCACACTGATTTGGATCATGAATGTGAGTCCAT
TCATCCACATGAGGTGGTTCTTCGGACCGCCTGTCCCCCAGATTACACACTAGCTATGAGGAGGTCACCT
GATGATGTTCCCTTAATGACACCCAACACCATTACAATGATTCCCAACACTATACCAGGGATTCAGCCCT
TACACACATTCAATACATTTACTGGAGGACAGAACAATACTCTGCCCCATCCCCATCCCCACCCCCATTC
ACATTCAACAACCAGGGTATAG

Translation (823 aa):
MALPRCTWPNYVWRAVMACLVHRGLGAPLTLCMLGCLLQAGHVLSQKLDDVDPLVATNFGKIRGIKKELN
NEILGPVIQFLGVPYAAPPTGERRFQPPEPPSPWSDIRNATQFAPVCPQNIIDGRLPEVMLPVWFTNNLD
VVSSYVQDQSEDCLYLNIYVPTEDDIRDSGGPKPVMVYIHGGSYMEGTGNLYDGSVLASYGNVIVITVNY
RLGVLGFLSTGDQAAKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEGNR
WSNSTKGLFQRAIAQSGTALSSWAVSFQPAKYARMLATKVGCNVSDTVELVECLQKKPYKELVDQDIQPA
RYHIAFGPVIDGDVIPDDPQILMEQGEFLNYDIMLGVNQGEGLKFVENIVDSDDGISASDFDFAVSNFVD
NLYGYPEGKDVLRETIKFMYTDWADRHNPETRRKTLLALFTDHQWVAPAVATADLHSNFGSPTYFYAFYH
HCQTDQVPAWADAAHGDEVPYVLGIPMIGPTELFPCNFSKNDVMLSAVVMTYWTNFAKTGDPNQPVPQDT
KFIHTKPNRFEEVAWTRYSQKDQLYLHIGLKPRVKEHYRANKVNLWLELVPHLHNLNDISQYTSTTTKVP
STDITFRPTRKNSVPVTSAFPTAKQDDPKQQPSPFSVDQRDYSTELSVTIAVGASLLFLNILAFAALYYK
KDKRRHDVHRRCSPQRTTTNDLTHAQEEEIMSLQMKHTDLDHECESIHPHEVVLRTACPPDYTLAMRRSP
DDVPLMTPNTITMIPNTIPGIQPLHTFNTFTGGQNNTLPHPHPHPHSHSTTRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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