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Report for CCDS32234.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32234.1 Public Homo sapiens 15 SECISBP2L 24 110 108 CCDS HistoryNCBI Gene:9728Re-query CCDS DB by CCDS ID:32234.1Re-query CCDS DB by GeneID:9728See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32234.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261847.7 ENSP00000261847.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000261847.7Link to Ensembl Protein Viewer:ENSP00000261847.3Re-query CCDS DB by Nucleotide ID:ENST00000261847Re-query CCDS DB by Protein ID:ENSP00000261847
Original member Current member NCBI NM_014701.4 NP_055516.2 Accepted alive Link to Nucleotide Sequence:NM_014701.4Link to Protein Sequence:NP_055516.2Re-query CCDS DB by Nucleotide ID:NM_014701Re-query CCDS DB by Protein ID:NP_055516Link to BLAST:NP_055516.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055516.2 1056 Q93073-2 1056 100% 0 0

Chromosomal Locations for CCDS 32234.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 48992244 48992926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 48996367 48996586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 48999833 48999987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 49000877 49001097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 49009216 49009378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 49011731 49011863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 49012648 49012817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 49016560 49016701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 49016848 49017015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 49017548 49017628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 49027365 49027480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 49028144 49028168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 49028453 49028682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 49032965 49033100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 49035334 49035658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 49037591 49037769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 49046276 49046299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3171 nt):
ATGGACCGAGCCCCCACGGAGCAGAATGTCAAGCTGTCAGCTGAGGTGGAGCCATTTATTCCCCAGAAGA
AGAGTCCTGATACATTTATGATCCCTATGGCTCTCCCAAATGATAATGGAAGTGTTTCTGGTGTGGAACC
AACTCCAATTCCCAGCTACCTGATTACTTGTTACCCATTTGTGCAGGAAAACCAGTCCAATAGACAGTTT
CCTTTATATAACAATGATATACGATGGCAACAACCCAATCCAAACCCTACTGGACCATACTTTGCCTATC
CCATTATATCTGCTCAGCCGCCTGTTTCTACAGAGTATACATATTATCAGCTGATGCCAGCACCATGTGC
CCAGGTTATGGGTTTCTATCATCCTTTTCCTACACCTTACTCCAACACCTTTCAGGCTGCAAATACTGTA
AATGCTATCACCACAGAATGCACTGAGCGTCCAAGTCAGCTTGGACAGGTCTTCCCATTGTCCAGCCATC
GAAGCAGAAACAGTAACAGAGGATCAGTGGTCCCAAAACAACAGCTTTTACAACAGCACATAAAAAGCAA
AAGGCCGCTGGTGAAAAATGTAGCTACTCAGAAAGAAACAAATGCAGCAGGTCCTGATAGTCGATCAAAA
ATTGTGCTTCTGGTAGATGCTTCACAGCAAACTGATTTCCCATCAGATATCGCTAACAAGTCTCTCTCAG
AGACCACTGCAACAATGCTCTGGAAGTCCAAGGGCAGGAGAAGAAGAGCATCCCACCCTACTGCTGAATC
TTCTAGTGAGCAGGGGGCTAGTGAAGCCGACATTGACAGTGATAGTGGTTACTGCAGTCCCAAACACAGC
AACAACCAGCCTGCAGCAGGGGCTTTGAGAAATCCTGATTCTGGGACCATGAATCATGTGGAATCATCTA
TGTGTGCAGGTGGTGTAAATTGGTCCAATGTAACTTGCCAGGCAACTCAGAAAAAACCTTGGATGGAAAA
AAATCAGACATTTTCTAGAGGTGGAAGGCAAACTGAACAAAGAAATAATTCACAGGATGAAGATGGGTTT
CAAGAACTAAATGAGAATGGAAATGCTAAGGATGAGAATATTCAACAAAAACTTTCTTCTAAAGTATTGG
ATGATTTACCTGAAAACTCACCAATCAATATAGTTCAGACTCCAATTCCTATTACCACCTCAGTTCCCAA
ACGTGCAAAAAGTCAGAAGAAGAAAGCTTTAGCAGCAGCCCTTGCCACAGCTCAAGAGTATTCAGAAATA
AGTATGGAGCAAAAAAAATTACAGGAAGCTTTATCAAAAGCAGCTGGAAAAAAGAATAAAACACCTGTGC
AGCTAGATTTAGGGGACATGTTAGCTGCTCTGGAAAAACAACAGCAAGCAATGAAAGCACGGCAAATTAC
TAACACCAGACCTCTGTCATATACAGTGGTTACTGCAGCTTCTTTTCACACTAAAGACTCTACTAATAGA
AAACCTTTAACCAAAAGTCAGCCCTGTTTGACATCCTTTAATTCTGTGGACATTGCTTCTTCTAAAGCAA
AAAAAGGAAAAGAGAAGGAAATTGCAAAACTAAAACGACCCACAGCACTTAAAAAGGTTATTTTAAAAGA
AAGAGAGGAAAAGAAGGGGCGCTTAACTGTGGACCACAATCTTTTGGGATCCGAGGAACCAACAGAAATG
CACTTAGATTTTATTGATGACTTGCCACAGGAGATTGTTTCCCAGGAAGATACTGGACTAAGCATGCCCA
GTGATACTTCACTCTCTCCAGCAAGTCAGAACTCTCCATACTGTATGACACCTGTGTCACAAGGCTCTCC
TGCTAGTTCTGGAATAGGCAGTCCAATGGCATCTTCAACAATAACCAAAATCCACAGCAAAAGATTTAGA
GAGTATTGTAATCAGGTTCTTTGTAAAGAGATTGATGAATGTGTGACTCTTCTTCTCCAAGAGCTTGTCA
GTTTCCAGGAACGCATCTACCAAAAAGATCCTGTAAGAGCAAAAGCAAGGAGACGACTCGTTATGGGTCT
AAGAGAAGTTACCAAACATATGAAGTTAAACAAGATCAAGTGTGTTATAATTTCTCCAAACTGTGAAAAA
ATCCAGTCAAAAGGTGGTCTGGATGAGGCTCTCTATAATGTTATAGCCATGGCACGGGAACAAGAAATTC
CTTTTGTGTTTGCCCTTGGAAGGAAAGCTCTAGGACGCTGTGTGAACAAGCTGGTTCCTGTTAGCGTAGT
GGGAATCTTCAACTACTTTGGTGCTGAGAGCCTGTTTAATAAATTAGTAGAACTCACTGAGGAGGCCAGG
AAAGCATATAAAGATATGGTTGCAGCAATGGAACAGGAGCAGGCTGAGGAAGCCTTAAAGAATGTGAAGA
AGGTACCACACCACATGGGACATTCTCGGAATCCCTCTGCAGCAAGTGCCATTTCTTTCTGCAGTGTTAT
TTCTGAACCGATCTCTGAAGTAAATGAAAAGGAATATGAAACAAATTGGAGAAACATGGTGGAAACTTCA
GATGGACTGGAAGCATCAGAAAATGAGAAAGAGGTATCCTGTAAGCACAGCACTTCTGAAAAACCCAGTA
AACTTCCATTTGACACACCCCCAATTGGTAAGCAGCCATCATTAGTGGCTACAGGCAGTACTACCTCAGC
TACAAGTGCTGGGAAATCCACAGCAAGTGATAAAGAGGAAGTGAAGCCAGATGACCTGGAATGGGCCTCA
CAGCAGAGTACAGAGACTGGCTCTTTGGATGGCAGTTGCCGAGATCTTTTGAATTCCTCCATCACCAGCA
CCACCAGCACTCTTGTACCTGGCATGCTTGAAGAAGAAGAAGATGAAGATGAGGAGGAGGAGGAAGATTA
TACTCATGAACCCATATCTGTAGAAGTGCAGCTCAATAGTAGAATTGAGTCTTGGGTCTCAGAGACCCAG
AGAACTATGGAAACCCTTCAGCTTGGAAAAACCCTTAATGGTTCTGAGGAAGACAATGTAGAGCAAAGTG
GAGAAGAGGAAGCAGAGGCGCCTGAGGTGCTGGAGCCAGGGATGGACAGTGAGGCATGGACTGCTGACCA
GCAGGCCAGTCCTGGGCAGCAGAAGTCCAGCAACTGCAGCTCGCTCAACAAAGAGCACTCTGATTCTAAT
TACACAACGCAAACTACGTAA

Translation (1056 aa):
MDRAPTEQNVKLSAEVEPFIPQKKSPDTFMIPMALPNDNGSVSGVEPTPIPSYLITCYPFVQENQSNRQF
PLYNNDIRWQQPNPNPTGPYFAYPIISAQPPVSTEYTYYQLMPAPCAQVMGFYHPFPTPYSNTFQAANTV
NAITTECTERPSQLGQVFPLSSHRSRNSNRGSVVPKQQLLQQHIKSKRPLVKNVATQKETNAAGPDSRSK
IVLLVDASQQTDFPSDIANKSLSETTATMLWKSKGRRRRASHPTAESSSEQGASEADIDSDSGYCSPKHS
NNQPAAGALRNPDSGTMNHVESSMCAGGVNWSNVTCQATQKKPWMEKNQTFSRGGRQTEQRNNSQDEDGF
QELNENGNAKDENIQQKLSSKVLDDLPENSPINIVQTPIPITTSVPKRAKSQKKKALAAALATAQEYSEI
SMEQKKLQEALSKAAGKKNKTPVQLDLGDMLAALEKQQQAMKARQITNTRPLSYTVVTAASFHTKDSTNR
KPLTKSQPCLTSFNSVDIASSKAKKGKEKEIAKLKRPTALKKVILKEREEKKGRLTVDHNLLGSEEPTEM
HLDFIDDLPQEIVSQEDTGLSMPSDTSLSPASQNSPYCMTPVSQGSPASSGIGSPMASSTITKIHSKRFR
EYCNQVLCKEIDECVTLLLQELVSFQERIYQKDPVRAKARRRLVMGLREVTKHMKLNKIKCVIISPNCEK
IQSKGGLDEALYNVIAMAREQEIPFVFALGRKALGRCVNKLVPVSVVGIFNYFGAESLFNKLVELTEEAR
KAYKDMVAAMEQEQAEEALKNVKKVPHHMGHSRNPSAASAISFCSVISEPISEVNEKEYETNWRNMVETS
DGLEASENEKEVSCKHSTSEKPSKLPFDTPPIGKQPSLVATGSTTSATSAGKSTASDKEEVKPDDLEWAS
QQSTETGSLDGSCRDLLNSSITSTTSTLVPGMLEEEEDEDEEEEEDYTHEPISVEVQLNSRIESWVSETQ
RTMETLQLGKTLNGSEEDNVEQSGEEEAEAPEVLEPGMDSEAWTADQQASPGQQKSSNCSSLNKEHSDSN
YTTQTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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