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Report for CCDS3233.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3233.1 Public Homo sapiens 3 MRPL47 24 110 108 CCDS HistoryNCBI Gene:57129Re-query CCDS DB by CCDS ID:3233.1Re-query CCDS DB by GeneID:57129See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3233.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392659.2 ENSP00000376427.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392659.2Link to Ensembl Protein Viewer:ENSP00000376427.2Re-query CCDS DB by Nucleotide ID:ENST00000392659Re-query CCDS DB by Protein ID:ENSP00000376427
Original member Current member NCBI NM_177988.1 NP_817125.1 Accepted alive Link to Nucleotide Sequence:NM_177988.1Link to Protein Sequence:NP_817125.1Re-query CCDS DB by Nucleotide ID:NM_177988Re-query CCDS DB by Protein ID:NP_817125Link to BLAST:NP_817125.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_817125.1 140 Q9HD33-3 140 100% 0 0

Chromosomal Locations for CCDS 3233.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 179588872 179588995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179592644 179592739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179593765 179593895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179598675 179598746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGCTTCTAACCCTAGAGCAGGAGGCCAAGCGGCAGAGATTGCCAATGCCAAGTCCAGAGCGGTTAGATA
AGGTAGTAGATTCCATGGATGCATTAGATAAAGTTGTCCAGGAAAGAGAAGATGCCCTAAGGCTTCTTCA
GACTGGTCAAGAAAGAGCTAGACCTGGTGCTTGGAGAAGAGACATCTTTGGAAGAATCATCTGGCACAAG
TTCAAGCAGTGGGTTATACCTTGGCACCTAAATAAAAGATACAATAGGAAACGATTCTTTGCCTTGCCTT
ATGTGGACCATTTTCTCAGACTGGAACGTGAGAAACGAGCCCGCATCAAAGCACGGAAGGAAAATTTAGA
GAGAAAGAAAGCAAAAATTCTTTTAAAAAAGTTTCCACATCTTGCTGAAGCCCAAAAGTCAAGTCTTGTC
TAA

Translation (140 aa):
MLLTLEQEAKRQRLPMPSPERLDKVVDSMDALDKVVQEREDALRLLQTGQERARPGAWRRDIFGRIIWHK
FKQWVIPWHLNKRYNRKRFFALPYVDHFLRLEREKRARIKARKENLERKKAKILLKKFPHLAEAQKSSLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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