NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS32386.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32386.1 Public Homo sapiens 16 LITAF 24 110 108 CCDS HistoryNCBI Gene:9516Re-query CCDS DB by CCDS ID:32386.1Re-query CCDS DB by GeneID:9516See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32386.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339430.9 ENSP00000340118.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000339430.9Link to Ensembl Protein Viewer:ENSP00000340118.5Re-query CCDS DB by Nucleotide ID:ENST00000339430Re-query CCDS DB by Protein ID:ENSP00000340118
Original member Current member EBI ENST00000570904.5 ENSP00000459138.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000570904.5Link to Ensembl Protein Viewer:ENSP00000459138.1Re-query CCDS DB by Nucleotide ID:ENST00000570904Re-query CCDS DB by Protein ID:ENSP00000459138
Original member Current member EBI ENST00000571688.5 ENSP00000459533.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000571688.5Link to Ensembl Protein Viewer:ENSP00000459533.1Re-query CCDS DB by Nucleotide ID:ENST00000571688Re-query CCDS DB by Protein ID:ENSP00000459533
Original member Current member EBI ENST00000576036.5 ENSP00000461667.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000576036.5Link to Ensembl Protein Viewer:ENSP00000461667.1Re-query CCDS DB by Nucleotide ID:ENST00000576036Re-query CCDS DB by Protein ID:ENSP00000461667
Original member Current member EBI ENST00000574763.5 ENSP00000461813.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000574763.5Link to Ensembl Protein Viewer:ENSP00000461813.1Re-query CCDS DB by Nucleotide ID:ENST00000574763Re-query CCDS DB by Protein ID:ENSP00000461813
Original member Current member EBI ENST00000622633.5 ENSP00000483114.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000622633.5Link to Ensembl Protein Viewer:ENSP00000483114.1Re-query CCDS DB by Nucleotide ID:ENST00000622633Re-query CCDS DB by Protein ID:ENSP00000483114
Original member Current member NCBI NM_001136472.2 NP_001129944.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001136472.2Link to Protein Sequence:NP_001129944.1Re-query CCDS DB by Nucleotide ID:NM_001136472Re-query CCDS DB by Protein ID:NP_001129944Link to BLAST:NP_001129944.1
Original member Current member NCBI NM_004862.4 NP_004853.2 Accepted alive Link to Nucleotide Sequence:NM_004862.4Link to Protein Sequence:NP_004853.2Re-query CCDS DB by Nucleotide ID:NM_004862Re-query CCDS DB by Protein ID:NP_004853Link to BLAST:NP_004853.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129944.1 161 Q99732-1 161 100% 0 0
NP_004853.2 161 Q99732-1 161 100% 0 0

Chromosomal Locations for CCDS 32386.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 11549637 11549745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11553533 11553689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11556511 11556730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (486 nt):
ATGTCGGTTCCAGGACCTTACCAGGCGGCCACTGGGCCTTCCTCAGCACCATCCGCACCTCCATCCTATG
AAGAGACAGTGGCTGTTAACAGTTATTACCCCACACCTCCAGCTCCCATGCCTGGGCCAACTACGGGGCT
TGTGACGGGGCCTGATGGGAAGGGCATGAATCCTCCTTCGTATTATACCCAGCCAGCGCCCATCCCCAAT
AACAATCCAATTACCGTGCAGACGGTCTACGTGCAGCACCCCATCACCTTTTTGGACCGCCCTATCCAAA
TGTGTTGTCCTTCCTGCAACAAGATGATCGTGAGTCAGCTGTCCTATAACGCCGGTGCTCTGACCTGGCT
GTCCTGCGGGAGCCTGTGCCTGCTGGGGTGCATAGCGGGCTGCTGCTTCATCCCCTTCTGCGTGGATGCC
CTGCAGGACGTGGACCATTACTGTCCCAACTGCAGAGCTCTCCTGGGCACCTACAAGCGTTTGTAG

Translation (161 aa):
MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPSYYTQPAPIPN
NNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCGSLCLLGCIAGCCFIPFCVDA
LQDVDHYCPNCRALLGTYKRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH