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Report for CCDS32408.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32408.1 Public Homo sapiens 16 ARHGAP17 24 110 108 CCDS HistoryNCBI Gene:55114Re-query CCDS DB by CCDS ID:32408.1Re-query CCDS DB by GeneID:55114See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32408.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303665.9 ENSP00000303130.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000303665.9Link to Ensembl Protein Viewer:ENSP00000303130.5Re-query CCDS DB by Nucleotide ID:ENST00000303665Re-query CCDS DB by Protein ID:ENSP00000303130
Original member Current member NCBI NM_018054.6 NP_060524.4 Accepted alive Link to Nucleotide Sequence:NM_018054.6Link to Protein Sequence:NP_060524.4Re-query CCDS DB by Nucleotide ID:NM_018054Re-query CCDS DB by Protein ID:NP_060524Link to BLAST:NP_060524.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060524.4 803 Q68EM7-2 803 100% 0 0

Chromosomal Locations for CCDS 32408.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 24920130 24920260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24930784 24931404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24935470 24935639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24941987 24942143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24943771 24943862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24947482 24947595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24949404 24949484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24952289 24952370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24952931 24953042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24954603 24954730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24959671 24959752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24959911 24959979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24964197 24964308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24968351 24968427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24968661 24968772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24970507 24970580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24977215 24977319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24978966 24979005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 25015209 25015261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2412 nt):
ATGAAGAAGCAGTTCAACCGCATGAAGCAGCTGGCTAACCAGACCGTGGGCAGAGCTGAGAAAACAGAAG
TCCTTAGTGAAGATCTATTACAGATTGAGAGACGCCTGGACACGGTGCGGTCAATATGCCACCATTCCCA
TAAGCGCTTGGTGGCATGTTTCCAGGGCCAGCATGGCACCGATGCCGAGAGGAGACACAAAAAACTGCCT
CTGACAGCTCTTGCTCAAAATATGCAAGAAGCATCGACTCAGCTGGAAGACTCTCTCCTGGGGAAGATGC
TGGAGACGTGTGGAGATGCTGAGAATCAGCTGGCTCTCGAGCTCTCCCAGCACGAAGTCTTTGTTGAGAA
GGAGATCGTGGACCCTCTGTACGGCATAGCTGAGGTGGAGATTCCCAACATCCAGAAGCAGAGGAAGCAG
CTTGCAAGATTGGTGTTAGACTGGGATTCAGTCAGAGCCAGGTGGAACCAAGCTCACAAATCCTCAGGAA
CCAACTTTCAGGGGCTTCCATCAAAAATAGATACTCTAAAGGAAGAGATGGATGAAGCTGGAAATAAAGT
AGAACAGTGCAAGGATCAACTTGCAGCAGACATGTACAACTTTATGGCCAAAGAAGGGGAGTATGGCAAA
TTCTTTGTTACGTTATTAGAAGCCCAAGCAGATTACCATAGAAAAGCATTAGCAGTCTTAGAAAAGACCC
TCCCCGAAATGCGAGCCCATCAAGATAAGTGGGCGGAAAAACCAGCCTTTGGGACTCCCCTAGAAGAACA
CCTGAAGAGGAGCGGGCGCGAGATTGCGCTGCCCATTGAAGCCTGTGTCATGCTGCTTCTGGAGACAGGC
ATGAAGGAGGAGGGCCTTTTCCGAATTGGGGCTGGGGCCTCCAAGTTAAAGAAGCTGAAAGCTGCTTTGG
ACTGTTCTACTTCTCACCTGGATGAGTTCTATTCAGACCCCCATGCTGTAGCAGGTGCTTTAAAATCCTA
TTTACGGGAATTGCCTGAACCTTTGATGACTTTTAATCTGTATGAAGAATGGACACAAGTTGCAAGTGTG
CAGGATCAAGACAAAAAACTTCAAGACTTGTGGAGAACATGTCAGAAGTTGCCACCACAAAATTTTGTTA
ACTTTAGATATTTGATCAAGTTCCTTGCAAAGCTTGCTCAGACCAGCGATGTGAATAAAATGACTCCCAG
CAACATTGCGATTGTGTTAGGCCCTAACTTGTTATGGGCCAGAAATGAAGGAACACTTGCTGAAATGGCA
GCAGCCACATCCGTCCATGTGGTTGCAGTGATTGAACCCATCATTCAGCATGCCGACTGGTTCTTCCCTG
AAGAGGTGGAATTTAATGTATCAGAAGCATTTGTACCTCTCACCACCCCGAGTTCTAATCACTCATTCCA
CACTGGAAACGACTCTGACTCGGGGACCCTGGAGAGGAAGCGGCCTGCTAGCATGGCGGTGATGGAAGGA
GACTTGGTGAAGAAGGAAAGTCCTCCCAAACCGAAGGACCCTGTATCTGCAGCTGTGCCAGCACCAGGGA
GAAACAACAGTCAGATAGCATCTGGCCAAAATCAGCCCCAGGCAGCTGCTGGCTCCCACCAGCTCTCCAT
GGGCCAACCTCACAATGCTGCAGGGCCCAGCCCGCATACACTGCGCCGAGCTGTTAAAAAACCCGCTCCA
GCACCCCCGAAACCGGGCAACCCACCTCCTGGCCACCCCGGGGGCCAGAGTTCTTCAGGAACATCTCAGC
ATCCACCCAGTCTGTCACCAAAGCCACCCACCCGAAGCCCCTCTCCTCCCACCCAGCACACGGGCCAGCC
TCCAGGCCAGCCCTCCGCCCCCTCCCAGCTCTCAGCACCCCGGAGGTACTCCAGCAGCTTGTCTCCAATC
CAAGCTCCCAATCACCCACCGCCGCAGCCCCCTACGCAGGCCACGCCACTGATGCACACCAAACCCAATA
GCCAGGGCCCTCCCAACCCCATGGCATTGCCCAGTGAGCATGGACTTGAGCAGCCATCTCACACCCCTCC
CCAGACTCCAACGCCCCCCAGTACTCCGCCCCTAGGAAAACAGAACCCCAGTCTGCCAGCTCCTCAGACC
CTGGCAGGGGGTAACCCTGAAACTGCACAGCCACATGCTGGAACCTTACCGAGACCGAGACCAGTACCAA
AGCCAAGGAACCGGCCCAGCGTGCCCCCACCCCCCCAACCTCCTGGTGTCCACTCAGCTGGGGACAGCAG
CCTCACCAACACAGCACCAACAGCTTCCAAGATAGTAACAGACTCCAATTCCAGGGTTTCAGAACCGCAT
CGCAGCATCTTTCCTGAAATGCACTCAGACTCAGCCAGCAAAGACGTGCCTGGCCGCATCCTGCTGGATA
TAGACAATGATACCGAGAGCACTGCCCTGTGA

Translation (803 aa):
MKKQFNRMKQLANQTVGRAEKTEVLSEDLLQIERRLDTVRSICHHSHKRLVACFQGQHGTDAERRHKKLP
LTALAQNMQEASTQLEDSLLGKMLETCGDAENQLALELSQHEVFVEKEIVDPLYGIAEVEIPNIQKQRKQ
LARLVLDWDSVRARWNQAHKSSGTNFQGLPSKIDTLKEEMDEAGNKVEQCKDQLAADMYNFMAKEGEYGK
FFVTLLEAQADYHRKALAVLEKTLPEMRAHQDKWAEKPAFGTPLEEHLKRSGREIALPIEACVMLLLETG
MKEEGLFRIGAGASKLKKLKAALDCSTSHLDEFYSDPHAVAGALKSYLRELPEPLMTFNLYEEWTQVASV
QDQDKKLQDLWRTCQKLPPQNFVNFRYLIKFLAKLAQTSDVNKMTPSNIAIVLGPNLLWARNEGTLAEMA
AATSVHVVAVIEPIIQHADWFFPEEVEFNVSEAFVPLTTPSSNHSFHTGNDSDSGTLERKRPASMAVMEG
DLVKKESPPKPKDPVSAAVPAPGRNNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLRRAVKKPAP
APPKPGNPPPGHPGGQSSSGTSQHPPSLSPKPPTRSPSPPTQHTGQPPGQPSAPSQLSAPRRYSSSLSPI
QAPNHPPPQPPTQATPLMHTKPNSQGPPNPMALPSEHGLEQPSHTPPQTPTPPSTPPLGKQNPSLPAPQT
LAGGNPETAQPHAGTLPRPRPVPKPRNRPSVPPPPQPPGVHSAGDSSLTNTAPTASKIVTDSNSRVSEPH
RSIFPEMHSDSASKDVPGRILLDIDNDTESTAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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