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Report for CCDS33026.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33026.2 Public Homo sapiens 19 ZNF780A 24 110 108 CCDS HistoryNCBI Gene:284323Re-query CCDS DB by CCDS ID:33026.2Re-query CCDS DB by GeneID:284323See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 33026.1
The coding region has been updated to extend the N-terminus to one that is supported by available conservation data and transcripts. The upstream AUG at the start of the update has a strong Kozak sequence and shows moderate conservation while the downstream AUG has a weaker Kozak sequence. The N-terminal extension completes a truncated KRAB box domain.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 33026.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340963.9 ENSP00000341507.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340963.9Link to Ensembl Protein Viewer:ENSP00000341507.5Re-query CCDS DB by Nucleotide ID:ENST00000340963Re-query CCDS DB by Protein ID:ENSP00000341507
Original member Current member EBI ENST00000595687.6 ENSP00000472189.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000595687.6Link to Ensembl Protein Viewer:ENSP00000472189.1Re-query CCDS DB by Nucleotide ID:ENST00000595687Re-query CCDS DB by Protein ID:ENSP00000472189
Original member Current member EBI ENST00000683561.1 ENSP00000506741.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683561.1Link to Ensembl Protein Viewer:ENSP00000506741.1Re-query CCDS DB by Nucleotide ID:ENST00000683561Re-query CCDS DB by Protein ID:ENSP00000506741
Original member Current member NCBI NM_001010880.3 NP_001010880.2 Accepted alive Link to Nucleotide Sequence:NM_001010880.3Link to Protein Sequence:NP_001010880.2Re-query CCDS DB by Nucleotide ID:NM_001010880Re-query CCDS DB by Protein ID:NP_001010880Link to BLAST:NP_001010880.2
Original member Current member NCBI NM_001142578.2 NP_001136050.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001142578.2Link to Protein Sequence:NP_001136050.1Re-query CCDS DB by Nucleotide ID:NM_001142578Re-query CCDS DB by Protein ID:NP_001136050Link to BLAST:NP_001136050.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010880.2 641 O75290-1 641 100% 0 0
NP_001136050.1 641 O75290-1 641 100% 0 0

Chromosomal Locations for CCDS 33026.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 40074516 40076209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40081819 40081914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40083111 40083237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40084745 40084753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1926 nt):
ATGGTCCATGGATCAGTGACATTCAGGGATGTGGCCATTGACTTCTCTCAGGAGGAGTGGGAGTGCCTGC
AGCCTGATCAGAGGACCTTGTACAGGGATGTGATGTTGGAGAACTACAGCCACCTGATCTCACTGGGAAG
TTCCATTTCTAAACCAGATGTAATTACGTTACTAGAGCAAGAGAAAGAGCCCTGGATGGTTGTAAGGAAA
GAAACAAGCAGACGGTATCCAGATTTGGAGTTAAAATATGGACCTGAGAAAGTATCTCCAGAAAATGATA
CCTCTGAAGTAAATTTACCCAAACAGGTTATAAAGCAAATAAGTACAACTCTTGGCATTGAGGCCTTTTA
TTTTAGAAATGACTCAGAATATAGACAATTTGAGGGACTACAGGGATATCAAGAAGGAAATATCAATCAA
AAGATGATCAGCTATGAAAAACTGCCTACTCATACTCCTCATGCTTCTCTTATTTGCAATACACATAAAC
CGTATGAATGTAAGGAATGTGGGAAATACTTTAGTCGTAGTGCAAATCTTATTCAGCATCAGAGTATTCA
TACTGGAGAGAAACCCTTTGAATGTAAGGAGTGTGGGAAAGCCTTTCGACTTCACATACAATTTACTCGA
CATCAGAAATTTCATACTGGTGAGAAACCTTTTGAATGTAACGAATGTGGAAAGGCCTTTAGTCTTCTTA
CCCTGCTTAATCGCCATAAGAACATTCACACAGGTGAGAAACTGTTTGAATGTAAGGAATGTGGGAAGTC
CTTTAATCGTAGCTCAAACCTTGTTCAACATCAGAGTATTCATTCTGGTGTAAAACCATATGAATGTAAG
GAGTGTGGGAAAGGCTTTAATCGTGGTGCACACCTTATTCAGCATCAGAAAATTCATTCCAATGAGAAAC
CCTTTGTATGTAAGGAATGTGGGATGGCCTTTCGATATCATTACCAACTTATTGAACATTGCCAAATTCA
TACTGGTGAGAAACCCTTTGAATGTAAAGAATGTGGAAAGGCGTTTACTCTTCTGACAAAGCTTGTTCGA
CATCAGAAGATTCATACTGGTGAGAAACCCTTTGAATGCAGGGAATGTGGGAAGGCCTTTAGTCTTCTCA
ACCAGCTTAATCGCCATAAGAACATTCACACAGGTGAAAAACCGTTTGAATGTAAGGAATGTGGGAAGTC
CTTTAATCGTAGCTCAAACCTTGTTCAACATCAGAGTATTCATGCTGGTATAAAACCATATGAATGTAAG
GAGTGTGGGAAAGGCTTTAATCGTGGTGCACACCTTATTCAGCATCAGAAAATTCATTCCAATGAGAAAC
CTTTTGTATGTAGGGAATGTGAGATGGCCTTTAGATATCATTGCCAACTTATTGAACATTCTCGAATTCA
TACTGGTGACAAGCCATTTGAATGTCAAGACTGTGGGAAGGCCTTCAATCGTGGCTCAAGCCTTGTTCAA
CATCAGAGTATTCACACTGGTGAGAAGCCCTATGAATGTAAGGAGTGTGGGAAGGCTTTTAGACTTTACC
TACAACTTTCCCAACATCAGAAAACTCACACAGGTGAAAAACCATTTGAATGTAAGGAATGTGGGAAATT
CTTTCGTCGTGGTTCAAATCTTAATCAACATCGAAGTATTCATACTGGAAAGAAACCCTTTGAATGTAAG
GAATGTGGGAAAGCCTTTCGACTTCATATGCACCTTATTCGACATCAGAAATTGCATACTGGTGAGAAAC
CCTTTGAATGTAAGGAGTGTGGGAAAGCCTTTCGACTTCATATGCAACTTATTCGACATCAGAAATTGCA
TACTGGTGAGAAACCCTTTGAATGTAAGGAATGTGGAAAGGTTTTTAGTCTTCCCACCCAGCTTAATCGC
CATAAGAACATTCACACAGGTGAGAAGGCATCTTGA

Translation (641 aa):
MVHGSVTFRDVAIDFSQEEWECLQPDQRTLYRDVMLENYSHLISLGSSISKPDVITLLEQEKEPWMVVRK
ETSRRYPDLELKYGPEKVSPENDTSEVNLPKQVIKQISTTLGIEAFYFRNDSEYRQFEGLQGYQEGNINQ
KMISYEKLPTHTPHASLICNTHKPYECKECGKYFSRSANLIQHQSIHTGEKPFECKECGKAFRLHIQFTR
HQKFHTGEKPFECNECGKAFSLLTLLNRHKNIHTGEKLFECKECGKSFNRSSNLVQHQSIHSGVKPYECK
ECGKGFNRGAHLIQHQKIHSNEKPFVCKECGMAFRYHYQLIEHCQIHTGEKPFECKECGKAFTLLTKLVR
HQKIHTGEKPFECRECGKAFSLLNQLNRHKNIHTGEKPFECKECGKSFNRSSNLVQHQSIHAGIKPYECK
ECGKGFNRGAHLIQHQKIHSNEKPFVCRECEMAFRYHCQLIEHSRIHTGDKPFECQDCGKAFNRGSSLVQ
HQSIHTGEKPYECKECGKAFRLYLQLSQHQKTHTGEKPFECKECGKFFRRGSNLNQHRSIHTGKKPFECK
ECGKAFRLHMHLIRHQKLHTGEKPFECKECGKAFRLHMQLIRHQKLHTGEKPFECKECGKVFSLPTQLNR
HKNIHTGEKAS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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