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Report for CCDS33118.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33118.1 Public Homo sapiens 19 CCDC106 24 110 108 CCDS HistoryNCBI Gene:29903Re-query CCDS DB by CCDS ID:33118.1Re-query CCDS DB by GeneID:29903See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33118.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308964.7 ENSP00000309681.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000308964.7Link to Ensembl Protein Viewer:ENSP00000309681.2Re-query CCDS DB by Nucleotide ID:ENST00000308964Re-query CCDS DB by Protein ID:ENSP00000309681
Original member Current member EBI ENST00000586790.6 ENSP00000465757.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000586790.6Link to Ensembl Protein Viewer:ENSP00000465757.1Re-query CCDS DB by Nucleotide ID:ENST00000586790Re-query CCDS DB by Protein ID:ENSP00000465757
Original member Current member EBI ENST00000591578.5 ENSP00000466870.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000591578.5Link to Ensembl Protein Viewer:ENSP00000466870.1Re-query CCDS DB by Nucleotide ID:ENST00000591578Re-query CCDS DB by Protein ID:ENSP00000466870
Original member Current member EBI ENST00000588740.5 ENSP00000468539.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000588740.5Link to Ensembl Protein Viewer:ENSP00000468539.1Re-query CCDS DB by Nucleotide ID:ENST00000588740Re-query CCDS DB by Protein ID:ENSP00000468539
Original member Current member NCBI NM_001370467.1 NP_001357396.1 Accepted alive Link to Nucleotide Sequence:NM_001370467.1Link to Protein Sequence:NP_001357396.1Re-query CCDS DB by Nucleotide ID:NM_001370467Re-query CCDS DB by Protein ID:NP_001357396Link to BLAST:NP_001357396.1
Original member Current member NCBI NM_001370468.1 NP_001357397.1 Accepted alive Link to Nucleotide Sequence:NM_001370468.1Link to Protein Sequence:NP_001357397.1Re-query CCDS DB by Nucleotide ID:NM_001370468Re-query CCDS DB by Protein ID:NP_001357397Link to BLAST:NP_001357397.1
Original member Current member NCBI NM_001370469.1 NP_001357398.1 Accepted alive Link to Nucleotide Sequence:NM_001370469.1Link to Protein Sequence:NP_001357398.1Re-query CCDS DB by Nucleotide ID:NM_001370469Re-query CCDS DB by Protein ID:NP_001357398Link to BLAST:NP_001357398.1
Original member Current member NCBI NM_001370470.1 NP_001357399.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001370470.1Link to Protein Sequence:NP_001357399.1Re-query CCDS DB by Nucleotide ID:NM_001370470Re-query CCDS DB by Protein ID:NP_001357399Link to BLAST:NP_001357399.1
Original member Current member NCBI NM_013301.2 NP_037433.2 Accepted alive Link to Nucleotide Sequence:NM_013301.2Link to Protein Sequence:NP_037433.2Re-query CCDS DB by Nucleotide ID:NM_013301Re-query CCDS DB by Protein ID:NP_037433Link to BLAST:NP_037433.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357396.1 280 Q9BWC9 280 100% 0 0
NP_001357397.1 280 Q9BWC9 280 100% 0 0
NP_001357398.1 280 Q9BWC9 280 100% 0 0
NP_001357399.1 280 Q9BWC9 280 100% 0 0
NP_037433.2 280 Q9BWC9 280 100% 0 0

Chromosomal Locations for CCDS 33118.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 55649047 55649077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55649205 55649309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55649408 55649584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55651283 55651495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55652430 55652746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (843 nt):
ATGAATGACCGGAGCAGTCGGAGGCGGACAATGAAGGACGATGAGACCTTCGAGATCTCCATTCCCTTCG
ATGAGGCACCCCACCTAGACCCACAGATCTTTTACAGTCTGAGCCCCTCTCGGAGAAACTTCGAGGAGCC
TCCGGAGGCTGCGTCCTCCGCCCTGGCTCTGATGAACAGCGTCAAGACCCAGCTGCACATGGCTCTGGAG
AGGAACTCCTGGCTGCAGAAGCGCATCGAGGACCTGGAGGAAGAGAGGGACTTCCTGCGGTGCCAGCTGG
ACAAATTCATCTCTTCTGCTCGGATGGAGGCAGAGGACCACTGCCGGATGAAGCCTGGGCCCAGGCGGAT
GGAGGGGGACAGCCGTGGTGGGGCTGGGGGCGAGGCCTCGGACCCTGAGTCAGCAGCCTCCTCCCTCAGC
GGAGCGTCCGAAGAAGGCAGCGCCAGTGAGAGGAGGCGGCAGAAGCAGAAGGGAGGTGCTAGTCGGAGGC
GCTTTGGGAAGCCCAAGGCCCGGGAGAGGCAGCGAGTGAAGGACGCCGACGGGGTCCTCTGCCGGTACAA
GAAGATCCTGGGCACCTTCCAGAAGCTCAAGAGCATGTCGCGGGCCTTCGAGCACCACCGCGTGGACAGG
AACACCGTGGCGCTGACCACGCCCATCGCCGAGCTGCTCATTGTGGCCCCCGAGAAGCTGGCCGAGGTGG
GCGAGTTCGACCCCTCCAAGGAGCGCCTGCTCGAGTACTCCCGCCGCTGCTTTCTGGCCCTGGACGACGA
GACGCTCAAGAAGGTGCAGGCGCTCAAGAAGAGCAAGCTGCTGCTGCCCATCACCTACCGCTTCAAGCGG
TGA

Translation (280 aa):
MNDRSSRRRTMKDDETFEISIPFDEAPHLDPQIFYSLSPSRRNFEEPPEAASSALALMNSVKTQLHMALE
RNSWLQKRIEDLEEERDFLRCQLDKFISSARMEAEDHCRMKPGPRRMEGDSRGGAGGEASDPESAASSLS
GASEEGSASERRRQKQKGGASRRRFGKPKARERQRVKDADGVLCRYKKILGTFQKLKSMSRAFEHHRVDR
NTVALTTPIAELLIVAPEKLAEVGEFDPSKERLLEYSRRCFLALDDETLKKVQALKKSKLLLPITYRFKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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