CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS33162.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
33162.2 |
Public |
Homo sapiens |
2 |
CGREF1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:10669](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:33162.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:10669](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 2 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 33162.1 |
The coding region has been updated to include an additional segment in the 3' coding region. This region corresponds to a tandem repeat encoding a 17 aa segment, which is present 4.4 times in the reference genome sequence. These tandem repeats are described in PMID:8968090. It should be noted that the majority of available transcript data represent an allele lacking one of these repeats, whereas this update represents the number of repeats found in the reference genome sequence. |
Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 33162.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000312734.8 |
ENSP00000324025.4 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000312734.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000324025.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000312734](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000324025](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000402394.6 |
ENSP00000385452.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000402394.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000385452.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000402394](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000385452](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000405600.5 |
ENSP00000386113.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000405600.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000386113.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000405600](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000386113](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001166239.2 |
NP_001159711.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001166239.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001159711.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001166239](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001159711](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001159711.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_006569.6 |
NP_006560.3 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_006569.6](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_006560.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_006569](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_006560](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_006560.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 33162.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (957 nt): ATGTTACCTTTGACGATGACAGTGTTAATCCTGCTGCTGCTCCCCACGGGTCAGGCTGCCCCAAAGGATG GAGTCACAAGGCCAGACTCTGAAGTGCAGCATCAGCTCCTGCCCAACCCCTTCCAGCCAGGCCAGGAGCA GCTCGGACTTCTGCAGAGCTACCTAAAGGGACTAGGAAGGACAGAAGTGCAACTGGAGCATCTGAGCCGG GAGCAGGTTCTCCTCTACCTCTTTGCCCTCCATGACTATGACCAGAGTGGACAGCTGGATGGCCTGGAGC TGCTGTCCATGTTGACAGCTGCTCTGGCCCCTGGAGCTGCCAACTCTCCTACCACCAACCCGGTGATCTT GATAGTGGACAAAGTGCTCGAGACCCAGGACCTGAATGGGGATGGGCTCATGACCCCTGCTGAGCTCATC AACTTCCCGGGAGTAGCCCTCAGGCACGTGGAGCCCGGAGAGCCCCTTGCTCCATCTCCTCAGGAGCCAC AAGCTGTTGGAAGGCAGTCCCTATTAGCTAAAAGCCCATTAAGACAAGAAACACAGGAAGCCCCTGGTCC CAGAGAAGAAGCAAAGGGCCAGGTAGAGGCCAGAAGGGAGTCTTTGGATCCTGTCCAGGAGCCTGGGGGC CAGGCAGAGGCTGATGGAGATGTTCCAGGGCCCAGAGGGGAAGCTGAGGGCCAGGCAGAGGCTAAAGGAG ATGCCCCTGGGCCCAGAGGGGAAGCTGGGGGCCAGGCAGAGGCTGAAGGAGATGCCCCCGGGCCCAGAGG GGAAGCTGGGGGCCAGGCAGAGGCTGAAGGAGATGCCCCCGGGCCCAGAGGGGAAGCTGGGGGCCAGGCA GAGGCCAGGGAGAATGGAGAGGAGGCCAAGGAACTTCCAGGGGAAACACTGGAGTCTAAGAACACCCAAA ATGACTTTGAGGTGCACATTGTTCAAGTGGAGAATGATGAGATCTAG
Translation (318 aa): MLPLTMTVLILLLLPTGQAAPKDGVTRPDSEVQHQLLPNPFQPGQEQLGLLQSYLKGLGRTEVQLEHLSR EQVLLYLFALHDYDQSGQLDGLELLSMLTAALAPGAANSPTTNPVILIVDKVLETQDLNGDGLMTPAELI NFPGVALRHVEPGEPLAPSPQEPQAVGRQSLLAKSPLRQETQEAPGPREEAKGQVEARRESLDPVQEPGG QAEADGDVPGPRGEAEGQAEAKGDAPGPRGEAGGQAEAEGDAPGPRGEAGGQAEAEGDAPGPRGEAGGQA EARENGEEAKELPGETLESKNTQNDFEVHIVQVENDEI
|