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Report for CCDS33162.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33162.2 Public Homo sapiens 2 CGREF1 24 110 108 CCDS HistoryNCBI Gene:10669Re-query CCDS DB by CCDS ID:33162.2Re-query CCDS DB by GeneID:10669See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 33162.1
The coding region has been updated to include an additional segment in the 3' coding region. This region corresponds to a tandem repeat encoding a 17 aa segment, which is present 4.4 times in the reference genome sequence. These tandem repeats are described in PMID:8968090. It should be noted that the majority of available transcript data represent an allele lacking one of these repeats, whereas this update represents the number of repeats found in the reference genome sequence.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 33162.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312734.8 ENSP00000324025.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000312734.8Link to Ensembl Protein Viewer:ENSP00000324025.4Re-query CCDS DB by Nucleotide ID:ENST00000312734Re-query CCDS DB by Protein ID:ENSP00000324025
Original member Current member EBI ENST00000402394.6 ENSP00000385452.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000402394.6Link to Ensembl Protein Viewer:ENSP00000385452.1Re-query CCDS DB by Nucleotide ID:ENST00000402394Re-query CCDS DB by Protein ID:ENSP00000385452
Original member Current member EBI ENST00000405600.5 ENSP00000386113.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405600.5Link to Ensembl Protein Viewer:ENSP00000386113.1Re-query CCDS DB by Nucleotide ID:ENST00000405600Re-query CCDS DB by Protein ID:ENSP00000386113
Original member Current member NCBI NM_001166239.2 NP_001159711.1 Accepted alive Link to Nucleotide Sequence:NM_001166239.2Link to Protein Sequence:NP_001159711.1Re-query CCDS DB by Nucleotide ID:NM_001166239Re-query CCDS DB by Protein ID:NP_001159711Link to BLAST:NP_001159711.1
Original member Current member NCBI NM_006569.6 NP_006560.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006569.6Link to Protein Sequence:NP_006560.3Re-query CCDS DB by Nucleotide ID:NM_006569Re-query CCDS DB by Protein ID:NP_006560Link to BLAST:NP_006560.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159711.1 318 Q99674-4 318 100% 0 0
NP_006560.3 318 Q99674-4 318 100% 0 0

Chromosomal Locations for CCDS 33162.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27101274 27101888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27102097 27102221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27102360 27102430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27102526 27102591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27104287 27104366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGTTACCTTTGACGATGACAGTGTTAATCCTGCTGCTGCTCCCCACGGGTCAGGCTGCCCCAAAGGATG
GAGTCACAAGGCCAGACTCTGAAGTGCAGCATCAGCTCCTGCCCAACCCCTTCCAGCCAGGCCAGGAGCA
GCTCGGACTTCTGCAGAGCTACCTAAAGGGACTAGGAAGGACAGAAGTGCAACTGGAGCATCTGAGCCGG
GAGCAGGTTCTCCTCTACCTCTTTGCCCTCCATGACTATGACCAGAGTGGACAGCTGGATGGCCTGGAGC
TGCTGTCCATGTTGACAGCTGCTCTGGCCCCTGGAGCTGCCAACTCTCCTACCACCAACCCGGTGATCTT
GATAGTGGACAAAGTGCTCGAGACCCAGGACCTGAATGGGGATGGGCTCATGACCCCTGCTGAGCTCATC
AACTTCCCGGGAGTAGCCCTCAGGCACGTGGAGCCCGGAGAGCCCCTTGCTCCATCTCCTCAGGAGCCAC
AAGCTGTTGGAAGGCAGTCCCTATTAGCTAAAAGCCCATTAAGACAAGAAACACAGGAAGCCCCTGGTCC
CAGAGAAGAAGCAAAGGGCCAGGTAGAGGCCAGAAGGGAGTCTTTGGATCCTGTCCAGGAGCCTGGGGGC
CAGGCAGAGGCTGATGGAGATGTTCCAGGGCCCAGAGGGGAAGCTGAGGGCCAGGCAGAGGCTAAAGGAG
ATGCCCCTGGGCCCAGAGGGGAAGCTGGGGGCCAGGCAGAGGCTGAAGGAGATGCCCCCGGGCCCAGAGG
GGAAGCTGGGGGCCAGGCAGAGGCTGAAGGAGATGCCCCCGGGCCCAGAGGGGAAGCTGGGGGCCAGGCA
GAGGCCAGGGAGAATGGAGAGGAGGCCAAGGAACTTCCAGGGGAAACACTGGAGTCTAAGAACACCCAAA
ATGACTTTGAGGTGCACATTGTTCAAGTGGAGAATGATGAGATCTAG

Translation (318 aa):
MLPLTMTVLILLLLPTGQAAPKDGVTRPDSEVQHQLLPNPFQPGQEQLGLLQSYLKGLGRTEVQLEHLSR
EQVLLYLFALHDYDQSGQLDGLELLSMLTAALAPGAANSPTTNPVILIVDKVLETQDLNGDGLMTPAELI
NFPGVALRHVEPGEPLAPSPQEPQAVGRQSLLAKSPLRQETQEAPGPREEAKGQVEARRESLDPVQEPGG
QAEADGDVPGPRGEAEGQAEAKGDAPGPRGEAGGQAEAEGDAPGPRGEAGGQAEAEGDAPGPRGEAGGQA
EARENGEEAKELPGETLESKNTQNDFEVHIVQVENDEI


Links Key
 Links to:   History report
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