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Report for CCDS33166.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33166.2 Public Homo sapiens 2 SLC4A1AP 24 110 108 CCDS HistoryNCBI Gene:22950Re-query CCDS DB by CCDS ID:33166.2Re-query CCDS DB by GeneID:22950See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 33166.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326019.11 ENSP00000323837.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000326019.11Link to Ensembl Protein Viewer:ENSP00000323837.7Re-query CCDS DB by Nucleotide ID:ENST00000326019Re-query CCDS DB by Protein ID:ENSP00000323837
Original member Current member EBI ENST00000618046.4 ENSP00000483501.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618046.4Link to Ensembl Protein Viewer:ENSP00000483501.1Re-query CCDS DB by Nucleotide ID:ENST00000618046Re-query CCDS DB by Protein ID:ENSP00000483501
Original member Current member NCBI NM_018158.3 NP_060628.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018158.3Link to Protein Sequence:NP_060628.3Re-query CCDS DB by Nucleotide ID:NM_018158Re-query CCDS DB by Protein ID:NP_060628Link to BLAST:NP_060628.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060628.3 742 Q9BWU0-2 742 100% 0 0

Chromosomal Locations for CCDS 33166.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27663915 27664577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27665100 27665295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27667268 27667390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27668843 27668903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27669248 27669387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27675532 27675692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27677295 27677364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27677738 27677924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27682248 27682359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27685037 27685277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27687934 27688020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27688700 27688767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27693685 27693754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27694634 27694683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2229 nt):
ATGGCTGACATTCTCTCTCAGTCAGAGACCCTGGCGTCGCAAGACCTCAGTGGGGACTTCAAGAAGCCAG
CTCTGCCGGTGTCCCCAGCGGCGCGGAGTAAGGCCCCGGCCAGCAGTTCTTCAAACCCTGAGGAGGTACA
GAAGGAAGGGCCCACTGCGTTGCAGGACTCCAATTCTGGGGAGCCCGACATCCCTCCTCCTCAGCCGGAC
TGCGGTGATTTTAGGAGTCTACAGGAGGAGCAGTCGCGCCCCCCGACAGCGGTTTCTTCCCCTGGCGGTC
CAGCCCGGGCTCCCCCCTACCAAGAGCCTCCATGGGGTGGCCCTGCCACAGCCCCCTACAGCTTAGAGAC
CCTGAAGGGCGGCACTATCCTTGGCACCCGTAGCTTGAAAGGGACGAGTTACTGCCTTTTCGGGAGGCTG
TCTGGCTGCGACGTGTGCCTGGAGCACCCTTCGGTGTCTCGGTACCACGCAGTGCTGCAGCACAGGGCGT
CCGGCCCTGACGGAGAATGCGACAGCAACGGGCCGGGCTTCTACCTCTACGATCTGGGAAGCACCCATGG
CACTTTTCTCAACAAAACTCGCATCCCACCTCGCACCTACTGTCGAGTCCACGTTGGGCATGTTGTTCGC
TTTGGAGGCAGCACCCGGCTCTTTATCCTGCAGGGACCAGAGGAAGACCGAGAGGCAGAATCCGAGTTAA
CAGTAACACAGTTGAAGGAATTGCGCAAGCAGCAGCAAATATTGTTGGAGAAGAAGATGCTAGGAGAAGA
CTCAGATGAAGAAGAGGAAATGGATACCTCTGAAAGGAAGATAAATGCTGGTAGCCAAGATGATGAGATG
GGTTGCACCTGGGGAATGGGAGAAGATGCAGTAGAGGATGATGCTGAAGAGAACCCTATTGTCTTAGAGT
TTCAGCAGGAAAGGGAGGCCTTTTATATAAAGGATCCCAAAAAGGCTCTCCAAGGCTTTTTTGACCGAGA
AGGAGAAGAATTAGAATATGAATTTGATGAACAGGGACATAGCACTTGGCTCTGCAGGGTGAGATTACCT
GTGGACGATTCAACTGGAAAACAACTGGTGGCTGAGGCCATTCACTCAGGAAAGAAAAAAGAAGCAATGA
TCCAGTGCTCATTGGAAGCTTGTCGGATTCTTGACACTTTGGGATTGCTTCGGCAGGAAGCAGTATCTCG
GAAAAGGAAAGCCAAGAACTGGGAAGATGAAGACTTTTATGATAGTGATGATGACACATTTCTTGATAGG
ACTGGCCTGATTGAGAAGAAGCGTCTGAACAGAATGAAGAAGGCTGGCAAGATTGATGAGAAGCCAGAGA
CCTTTGAATCATTGGTTGCAAAATTAAATGATGCTGAAAGGGAACTTTCTGAAATTTCTGAGAGATTGAA
AGCCTCAAGCCAAGTTCTATCAGAGTCTCCATCTCAGGATTCTTTAGATGCGTTCATGTCAGAAATGAAA
TCAGGCAGTACATTAGATGGTGTGTCCCGGAAGAAACTTCACCTGAGAACTTTTGAACTGAGGAAAGAAC
AACAGAGACTTAAAGGGTTAATAAAAATTGTAAAGCCAGCAGAGATTCCAGAACTAAAAAAGACTGAAAC
TCAGACTACAGGTGCAGAAAACAAAGCTAAAAAGCTTACATTGCCTCTATTTGGTGCCATGAAAGGAGGA
AGCAAATTCAAATTAAAAACTGGAACAGTAGGGAAGTTACCCCCCAAGCGTCCAGAACTCCCTCCAACTC
TAATGAGAATGAAAGATGAGCCTGAAGTAGAAGAGGAGGAGGAAGAGGAAGAGGAAGAAGAGAAAGAAAA
GGAGGAGCATGAAAAGAAAAAACTGGAGGATGGAAGCCTCAGTAGGCCACAGCCAGAGATAGAGCCAGAA
GCAGCAGTGCAGGAAATGAGGCCTCCCACAGATCTCACACATTTTAAAGAAACCCAAACCCATGAAAACA
TGTCTCAACTTAGCGAGGAAGAACAGAATAAAGATTATCAAGACTGTAGCAAAACCACTTCATTGTGCGC
AGGACCCTCAGCATCAAAGAATGAATATGAGAAAAGCAGAGGTGAATTGAAGAAAAAGAAAACACCTGGT
CCAGGCAAACTTCCACCAACACTTTCTTCCAAATATCCTGAAGATGACCCAGACTACTGTGTGTGGGTCC
CACCTGAAGGTCAAAGTGGAGATGGCAGAACCCATCTTAATGACAAGTATGGCTATTGA

Translation (742 aa):
MADILSQSETLASQDLSGDFKKPALPVSPAARSKAPASSSSNPEEVQKEGPTALQDSNSGEPDIPPPQPD
CGDFRSLQEEQSRPPTAVSSPGGPARAPPYQEPPWGGPATAPYSLETLKGGTILGTRSLKGTSYCLFGRL
SGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVVR
FGGSTRLFILQGPEEDREAESELTVTQLKELRKQQQILLEKKMLGEDSDEEEEMDTSERKINAGSQDDEM
GCTWGMGEDAVEDDAEENPIVLEFQQEREAFYIKDPKKALQGFFDREGEELEYEFDEQGHSTWLCRVRLP
VDDSTGKQLVAEAIHSGKKKEAMIQCSLEACRILDTLGLLRQEAVSRKRKAKNWEDEDFYDSDDDTFLDR
TGLIEKKRLNRMKKAGKIDEKPETFESLVAKLNDAERELSEISERLKASSQVLSESPSQDSLDAFMSEMK
SGSTLDGVSRKKLHLRTFELRKEQQRLKGLIKIVKPAEIPELKKTETQTTGAENKAKKLTLPLFGAMKGG
SKFKLKTGTVGKLPPKRPELPPTLMRMKDEPEVEEEEEEEEEEEKEKEEHEKKKLEDGSLSRPQPEIEPE
AAVQEMRPPTDLTHFKETQTHENMSQLSEEEQNKDYQDCSKTTSLCAGPSASKNEYEKSRGELKKKKTPG
PGKLPPTLSSKYPEDDPDYCVWVPPEGQSGDGRTHLNDKYGY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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