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Report for CCDS33481.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33481.1 Public Homo sapiens 20 STAU1 24 110 108 CCDS HistoryNCBI Gene:6780Re-query CCDS DB by CCDS ID:33481.1Re-query CCDS DB by GeneID:6780See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33481.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371802.5 ENSP00000360867.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371802.5Link to Ensembl Protein Viewer:ENSP00000360867.1Re-query CCDS DB by Nucleotide ID:ENST00000371802Re-query CCDS DB by Protein ID:ENSP00000360867
Original member Current member EBI ENST00000371828.7 ENSP00000360893.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371828.7Link to Ensembl Protein Viewer:ENSP00000360893.3Re-query CCDS DB by Nucleotide ID:ENST00000371828Re-query CCDS DB by Protein ID:ENSP00000360893
Original member Current member NCBI NM_001037328.3 NP_001032405.1 Accepted alive Link to Nucleotide Sequence:NM_001037328.3Link to Protein Sequence:NP_001032405.1Re-query CCDS DB by Nucleotide ID:NM_001037328Re-query CCDS DB by Protein ID:NP_001032405Link to BLAST:NP_001032405.1
Original member Current member NCBI NM_001319134.2 NP_001306063.1 Accepted alive Link to Nucleotide Sequence:NM_001319134.2Link to Protein Sequence:NP_001306063.1Re-query CCDS DB by Nucleotide ID:NM_001319134Re-query CCDS DB by Protein ID:NP_001306063Link to BLAST:NP_001306063.1
Original member Current member NCBI NM_001322927.2 NP_001309856.1 Accepted alive Link to Nucleotide Sequence:NM_001322927.2Link to Protein Sequence:NP_001309856.1Re-query CCDS DB by Nucleotide ID:NM_001322927Re-query CCDS DB by Protein ID:NP_001309856Link to BLAST:NP_001309856.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032405.1 502 O95793-3 502 100% 0 0
NP_001306063.1 502 O95793-3 502 100% 0 0
NP_001309856.1 502 O95793-3 502 100% 0 0

Chromosomal Locations for CCDS 33481.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 49114878 49114893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49115782 49115867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49117126 49117248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49117777 49118096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49118333 49118408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49119982 49120128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49123092 49123235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49124375 49124605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49135833 49135931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49151582 49151747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49153933 49154033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGAAACTTGGAAAAAAACCAATGTATAAGCCTGTTGACCCTTACTCTCGGATGCAGTCCACCTATAACT
ACAACATGAGAGGAGGTGCTTATCCCCCGAGGTACTTTTACCCATTTCCAGTTCCACCTTTACTTTATCA
AGTGGAACTTTCTGTGGGAGGACAGCAATTTAATGGCAAAGGAAAGACAAGACAGGCTGCGAAACACGAT
GCTGCTGCCAAAGCGTTGAGGATCCTGCAGAATGAGCCCCTGCCAGAGAGGCTGGAGGTGAATGGAAGAG
AATCCGAAGAAGAAAATCTCAATAAATCTGAAATAAGTCAAGTGTTTGAGATTGCACTTAAACGGAACTT
GCCTGTGAATTTCGAGTCTTTCCCTCTGAAACAGGTGGCCCGGGAGAGTGGCCCACCCCACATGAAGAAC
TTTGTGACCAAGGTTTCGGTTGGGGAGTTTGTGGGGGAAGGTGAAGGGAAAAGCAAGAAGATTTCAAAGA
AAAATGCCGCCATAGCTGTTCTTGAGGAGCTGAAGAAGTTACCGCCCCTGCCTGCAGTTGAACGAGTAAA
GCCTAGAATCAAAAAGAAAACAAAACCCATAGTCAAGCCACAGACAAGCCCAGAATATGGCCAGGGGATC
AATCCGATTAGCCGACTGGCCCAGATCCAGCAGGCAAAAAAGGAGAAGGAGCCAGAGTACACGCTCCTCA
CAGAGCGAGGCCTCCCGCGCCGCAGGGAGTTTGTGATGCAGGTGAAGGTTGGAAACCACACTGCAGAAGG
AACGGGCACCAACAAGAAGGTGGCCAAGCGCAATGCAGCCGAGAACATGCTGGAGATCCTTGGTTTCAAA
GTCCCGCAGGCGCAGCCCACCAAACCCGCACTCAAGTCAGAGGAGAAGACACCCATAAAGAAACCAGGGG
ATGGAAGAAAAGTAACCTTTTTTGAACCTGGCTCTGGGGATGAAAATGGGACTAGTAATAAAGAGGATGA
GTTCAGGATGCCTTATCTAAGTCATCAGCAGCTGCCTGCTGGAATTCTTCCCATGGTGCCCGAGGTCGCC
CAGGCTGTAGGAGTTAGTCAAGGACATCACACCAAAGATTTTACCAGGGCAGCTCCGAATCCTGCCAAGG
CCACGGTAACTGCCATGATAGCCCGAGAGTTGTTGTATGGGGGCACCTCGCCCACAGCCGAGACCATTTT
AAAGAATAACATCTCTTCAGGCCACGTACCCCATGGACCTCTCACGAGACCCTCTGAGCAACTGGACTAT
CTTTCCAGAGTCCAGGGATTCCAGGTTGAATACAAAGACTTCCCCAAAAACAACAAGAACGAATTTGTAT
CTCTTATCAATTGCTCCTCTCAGCCACCTCTGATCAGCCATGGTATCGGCAAGGATGTGGAGTCCTGCCA
TGATATGGCTGCGCTGAACATCTTAAAGTTGCTGTCTGAGTTGGACCAACAAAGTACAGAGATGCCAAGA
ACAGGAAACGGACCAATGTCTGTGTGTGGGAGGTGCTGA

Translation (502 aa):
MKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGKGKTRQAAKHD
AAAKALRILQNEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKN
FVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGI
NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFK
VPQAQPTKPALKSEEKTPIKKPGDGRKVTFFEPGSGDENGTSNKEDEFRMPYLSHQQLPAGILPMVPEVA
QAVGVSQGHHTKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGPLTRPSEQLDY
LSRVQGFQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSELDQQSTEMPR
TGNGPMSVCGRC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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