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Report for CCDS33487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33487.1 Public Homo sapiens 20 BCAS4 24 110 108 CCDS HistoryNCBI Gene:55653Re-query CCDS DB by CCDS ID:33487.1Re-query CCDS DB by GeneID:55653See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33487.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358791.9 ENSP00000351642.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358791.9Link to Ensembl Protein Viewer:ENSP00000351642.5Re-query CCDS DB by Nucleotide ID:ENST00000358791Re-query CCDS DB by Protein ID:ENSP00000351642
Original member Current member NCBI NM_017843.4 NP_060313.3 Accepted alive Link to Nucleotide Sequence:NM_017843.4Link to Protein Sequence:NP_060313.3Re-query CCDS DB by Nucleotide ID:NM_017843Re-query CCDS DB by Protein ID:NP_060313Link to BLAST:NP_060313.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060313.3 211 Q8TDM0-1 211 100% 0 0

Chromosomal Locations for CCDS 33487.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 50794994 50795173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50818211 50818282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50830279 50830380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50841766 50841900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50875997 50876093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50876486 50876535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGCAGCGGACCGGGGGCGGGGCTCCGAGGCCCGGGCGCAACCACGGGCTCCCAGGCAGCCTCCGCCAGC
CGGACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCG
CGAGCTCGCGCTCTTCCTGACCCCCGAGCCTGGGGCCGAGGCGAAGGAGGTGGAGGAGACCATCGAGGGC
ATGCTCCTCAGGCTGGAAGAGTTTTGCAGCCTGGCTGACCTGATCAGGAGTGATACTTCACAGATCCTGG
AGGAAAACATCCCAGTCCTTAAGGCCAAACTGACAGAAATGCGTGGCATCTATGCCAAAGTGGACCGGCT
AGAGGCCTTCGTCAAGATGGTTGGACACCACGTCGCCTTCCTGGAAGCAGACGTGCTTCAGGCTGAGCGG
GACCATGGGGCCTTCCCTCAGGCCCTGCGGAGGTGGCTGGGATCCGCAGGGCTCCCCTCCTTCAGGAACG
TGGAGTGCAGTGGCACAATCCCAGCTCGCTGCAACCTCCGCCTCCCGGGTTCAAGTGATTCTCCTGCCTC
CGCCTCCCAAGTAGCTGGGATTACAGAAGTCACCTGCACCGGTGCCCGTGACGTACGAGCTGCCCACACT
GTATAG

Translation (211 aa):
MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAEAKEVEETIEG
MLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLEAFVKMVGHHVAFLEADVLQAER
DHGAFPQALRRWLGSAGLPSFRNVECSGTIPARCNLRLPGSSDSPASASQVAGITEVTCTGARDVRAAHT
V


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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