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Report for CCDS3365.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3365.1 Public Homo sapiens 4 MFSD10 24 110 108 CCDS HistoryNCBI Gene:10227Re-query CCDS DB by CCDS ID:3365.1Re-query CCDS DB by GeneID:10227See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3365.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329687.8 ENSP00000332646.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000329687.8Link to Ensembl Protein Viewer:ENSP00000332646.4Re-query CCDS DB by Nucleotide ID:ENST00000329687Re-query CCDS DB by Protein ID:ENSP00000332646
Original member Current member EBI ENST00000355443.9 ENSP00000347619.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355443.9Link to Ensembl Protein Viewer:ENSP00000347619.4Re-query CCDS DB by Nucleotide ID:ENST00000355443Re-query CCDS DB by Protein ID:ENSP00000347619
Original member Current member NCBI NM_001120.5 NP_001111.3 Accepted alive Link to Nucleotide Sequence:NM_001120.5Link to Protein Sequence:NP_001111.3Re-query CCDS DB by Nucleotide ID:NM_001120Re-query CCDS DB by Protein ID:NP_001111Link to BLAST:NP_001111.3
Original member Current member NCBI NM_001146069.2 NP_001139541.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001146069.2Link to Protein Sequence:NP_001139541.1Re-query CCDS DB by Nucleotide ID:NM_001146069Re-query CCDS DB by Protein ID:NP_001139541Link to BLAST:NP_001139541.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001111.3 455 Q14728 455 100% 0 0
NP_001139541.1 455 Q14728 455 100% 0 0

Chromosomal Locations for CCDS 3365.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 2930838 2930953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2931061 2931150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2931227 2931274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2931375 2931465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2931555 2931663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2931825 2931936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2932045 2932153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2932351 2932512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2932600 2932758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2933106 2933209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2933567 2933663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2933753 2933923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGGGATGGGGAGGGGGTGGAGGCTGCACCCCGCGCCCACCCATCCACCAGCAGCCGCCGGAGCGCCGCG
TGGTCACCGTTGTCTTTCTCGGCCTCCTGCTGGACCTCCTGGCCTTCACGCTGCTGCTGCCCCTGCTGCC
CGGGCTGTTGGAGAGCCACGGCCGTGCCCACGACCCCCTCTATGGCTCCTGGCAGGGCGGGGTGGACTGG
TTTGCCACCGCCATCGGGATGCCAGTGGAGAAGAGGTACAACAGTGTCCTGTTCGGAGGTCTCATTGGCT
CGGCATTCTCTGTCCTGCAGTTTCTGTGTGCGCCACTCACTGGGGCCACCTCTGACTGCTTGGGGAGGCG
CCCGGTGATGCTGCTGTGCCTGATGGGTGTGGCCACCTCATATGCAGTCTGGGCCACCTCTCGGAGCTTT
GCGGCCTTCCTGGCCTCCAGGCTGATTGGGGGCATCAGCAAAGGGAACGTCAGCCTCTCCACGGCCATCG
TTGCTGACCTGGGCTCGCCTCTGGCCCGCAGTCAAGGCATGGCGGTCATTGGGGTGGCCTTCTCACTGGG
CTTCACCCTGGGCCCTATGCTCGGAGCCTCCCTGCCCCTGGAAATGGCACCCTGGTTTGCCCTGCTCTTC
GCAGCCTCCGACCTGCTGTTCATCTTCTGCTTCCTGCCAGAGACGCTGCCCCTGGAGAAACGGGCGCCCT
CTATCGCCCTGGGGTTCCGTGATGCGGCTGATCTGCTCAGCCCCCTGGCCCTGCTGCGCTTCTCGGCTGT
CGCTCGTGGCCAGGACCCACCCTCTGGAGACAGGCTCAGCAGCCTGCGCCGCCTGGGCCTAGTCTACTTC
CTCTACCTCTTCCTGTTCTCGGGCCTGGAGTACACGCTGAGCTTCCTCACACACCAGCGCTTCCAGTTCA
GTAGCCTACAGCAGGGGAAGATGTTTTTCCTCATCGGCCTCACCATGGCCACCATCCAGGGTGCCTATGC
CCGGCGGATCCACCCTGGCGGGGAAGTTGCTGCCGTGAAGCGGGCCCTCCTGCTGCTGGTGCCCGCCTTC
CTCCTCATCGGCTGGGGACGTTCTCTGCCCGTGCTGGGCCTGGGGCTGCTGCTCTACTCCTTTGCCGCCG
CCGTTGTGGTGCCCTGCCTGTCCTCCGTGGTCGCTGGCTATGGCTCACCAGGGCAGAAGGGCACGGTCAT
GGGTACACTGCGCAGCCTAGGTGCTCTGGCCAGGGCCGCGGGGCCCCTGGTGGCCGCTTCAGTGTACTGG
CTGGCCGGGGCCCAGGCCTGCTTCACCACGTGGTCCGGGCTCTTTTTGCTCCCCTTCTTCCTCCTGCAGA
AGCTGAGTTACCCGGCACAGACGCTCAAGGCTGAGTAG

Translation (455 aa):
MGWGGGGGCTPRPPIHQQPPERRVVTVVFLGLLLDLLAFTLLLPLLPGLLESHGRAHDPLYGSWQGGVDW
FATAIGMPVEKRYNSVLFGGLIGSAFSVLQFLCAPLTGATSDCLGRRPVMLLCLMGVATSYAVWATSRSF
AAFLASRLIGGISKGNVSLSTAIVADLGSPLARSQGMAVIGVAFSLGFTLGPMLGASLPLEMAPWFALLF
AASDLLFIFCFLPETLPLEKRAPSIALGFRDAADLLSPLALLRFSAVARGQDPPSGDRLSSLRRLGLVYF
LYLFLFSGLEYTLSFLTHQRFQFSSLQQGKMFFLIGLTMATIQGAYARRIHPGGEVAAVKRALLLLVPAF
LLIGWGRSLPVLGLGLLLYSFAAAVVVPCLSSVVAGYGSPGQKGTVMGTLRSLGALARAAGPLVAASVYW
LAGAQACFTTWSGLFLLPFFLLQKLSYPAQTLKAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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