NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS33654.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33654.1 Public Homo sapiens 22 CCDC134 24 110 108 CCDS HistoryNCBI Gene:79879Re-query CCDS DB by CCDS ID:33654.1Re-query CCDS DB by GeneID:79879See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33654.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000255784.6 ENSP00000255784.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000255784.6Link to Ensembl Protein Viewer:ENSP00000255784.5Re-query CCDS DB by Nucleotide ID:ENST00000255784Re-query CCDS DB by Protein ID:ENSP00000255784
Original member Current member NCBI NM_001382346.1 NP_001369275.1 Accepted alive Link to Nucleotide Sequence:NM_001382346.1Link to Protein Sequence:NP_001369275.1Re-query CCDS DB by Nucleotide ID:NM_001382346Re-query CCDS DB by Protein ID:NP_001369275Link to BLAST:NP_001369275.1
Original member Current member NCBI NM_024821.5 NP_079097.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024821.5Link to Protein Sequence:NP_079097.1Re-query CCDS DB by Nucleotide ID:NM_024821Re-query CCDS DB by Protein ID:NP_079097Link to BLAST:NP_079097.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001369275.1 229 Q9H6E4 229 100% 0 0
NP_079097.1 229 Q9H6E4 229 100% 0 0

Chromosomal Locations for CCDS 33654.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 41808891 41808993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41809879 41810000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41810207 41810291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41813264 41813445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41813751 41813822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41825698 41825823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGGACCTTCTTCAATTCCTGGCCTTCCTCTTTGTCCTGCTTTTGTCTGGGATGGGAGCCACAGGCACCT
TGAGGACCTCCCTGGACCCAAGCCTGGAGATCTACAAGAAGATGTTTGAGGTGAAGCGGCGGGAGCAGCT
GTTGGCACTGAAGAACCTGGCACAGCTGAACGACATCCACCAGCAGTACAAGATCCTTGATGTCATGCTC
AAGGGGCTCTTTAAGGTGCTGGAGGACTCCCGGACAGTGCTCACCGCTGCTGATGTGCTCCCAGATGGGC
CCTTCCCCCAGGACGAGAAGCTGAAGGATGCTTTCTCCCACGTGGTGGAGAACACGGCCTTCTTCGGCGA
TGTGGTGCTGCGCTTCCCGAGGATTGTGCACTATTACTTTGACCACAACTCCAACTGGAACCTCCTCATC
CGCTGGGGTATCAGTTTCTGCAACCAGACAGGCGTCTTCAACCAGGGGCCCCACTCGCCCATCCTCAGCC
TGATGGCCCAGGAGCTGGGGATCAGTGAGAAAGACTCCAACTTCCAGAACCCATTTAAAATCGACCGCAC
AGAGTTCATTCCCAGCACTGACCCTTTCCAGAAGGCCCTGAGAGAAGAAGAGAAACGCCGAAAGAAAGAG
GAGAAGCGGAAGGAGATCCGAAAAGGCCCAAGGATCTCCAGATCCCAGTCTGAGTTATAG

Translation (229 aa):
MDLLQFLAFLFVLLLSGMGATGTLRTSLDPSLEIYKKMFEVKRREQLLALKNLAQLNDIHQQYKILDVML
KGLFKVLEDSRTVLTAADVLPDGPFPQDEKLKDAFSHVVENTAFFGDVVLRFPRIVHYYFDHNSNWNLLI
RWGISFCNQTGVFNQGPHSPILSLMAQELGISEKDSNFQNPFKIDRTEFIPSTDPFQKALREEEKRRKKE
EKRKEIRKGPRISRSQSEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH