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Report for CCDS33820.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33820.1 Public Homo sapiens 3 GTPBP8 24 110 108 CCDS HistoryNCBI Gene:29083Re-query CCDS DB by CCDS ID:33820.1Re-query CCDS DB by GeneID:29083See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33820.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000383678.8 ENSP00000373176.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000383678.8Link to Ensembl Protein Viewer:ENSP00000373176.2Re-query CCDS DB by Nucleotide ID:ENST00000383678Re-query CCDS DB by Protein ID:ENSP00000373176
Original member Current member NCBI NM_014170.4 NP_054889.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014170.4Link to Protein Sequence:NP_054889.2Re-query CCDS DB by Nucleotide ID:NM_014170Re-query CCDS DB by Protein ID:NP_054889Link to BLAST:NP_054889.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054889.2 284 Q8N3Z3-1 284 100% 0 0

Chromosomal Locations for CCDS 33820.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 112991000 112991335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112993026 112993124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112995135 112995265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112996892 112996991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112999446 112999564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113000850 113000919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGGCGGCGCCCGGGCTGCGGCTGGGAGCGGGAAGACTCTTTGAAATGCCTGCGGTGCTAGAGCGACTGA
GCCGCTATAATAGCACGTCCCAAGCTTTTGCTGAGGTGCTGCGGCTGCCGAAGCAGCAGCTGAGGAAGCT
GCTGTACCCGCTGCAGGAAGTAGAGCGGTTCCTCGCCCCCTACGGGAGGCAAGACCTTCACCTGCGTATC
TTTGACCCAAGCCCGGAGGACATAGCCAGGGCGGACAACATCTTCACGGCCACTGAACGGAACCGCATCG
ACTACGTCAGCTCCGCCGTCCGTATCGACCACGCCCCGGACCTTCCGCGGCCAGAGGTGTGTTTTATAGG
CAGAAGCAATGTTGGAAAATCATCTCTAATCAAGGCTTTATTTTCACTGGCCCCTGAGGTTGAAGTCAGA
GTCTCCAAAAAACCAGGACACACAAAGAAAATGAATTTTTTCAAAGTTGGAAAACATTTTACAGTGGTGG
ACATGCCAGGTTATGGCTTTAGAGCACCTGAAGATTTTGTTGACATGGTAGAGACCTATCTAAAAGAACG
AAGGAACTTGAAGAGAACATTTTTATTAGTGGATAGCGTTGTTGGAATTCAAAAAACAGACAATATTGCC
ATAGAAATGTGTGAAGAATTTGCATTACCTTATGTGATTGTATTAACAAAAATTGACAAATCTTCCAAGG
GACATCTTTTAAAACAAGTGCTTCAGATCCAGAAATTTGTTAACATGAAAACTCAAGGATGTTTTCCTCA
GTTGTTTCCTGTAAGTGCTGTGACCTTTTCTGGAATCCACCTGTTGAGATGCTTTATAGCCAGTGTAACA
GGAAGTCTTGACTAA

Translation (284 aa):
MAAPGLRLGAGRLFEMPAVLERLSRYNSTSQAFAEVLRLPKQQLRKLLYPLQEVERFLAPYGRQDLHLRI
FDPSPEDIARADNIFTATERNRIDYVSSAVRIDHAPDLPRPEVCFIGRSNVGKSSLIKALFSLAPEVEVR
VSKKPGHTKKMNFFKVGKHFTVVDMPGYGFRAPEDFVDMVETYLKERRNLKRTFLLVDSVVGIQKTDNIA
IEMCEEFALPYVIVLTKIDKSSKGHLLKQVLQIQKFVNMKTQGCFPQLFPVSAVTFSGIHLLRCFIASVT
GSLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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