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Report for CCDS33893.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33893.2 Public Homo sapiens 3 NCEH1 24 110 108 CCDS HistoryNCBI Gene:57552Re-query CCDS DB by CCDS ID:33893.2Re-query CCDS DB by GeneID:57552See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 33893.1
The coding region has been updated to shorten the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 33893.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000475381.7 ENSP00000418571.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000475381.7Link to Ensembl Protein Viewer:ENSP00000418571.4Re-query CCDS DB by Nucleotide ID:ENST00000475381Re-query CCDS DB by Protein ID:ENSP00000418571
Original member Current member NCBI NM_020792.6 NP_065843.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020792.6Link to Protein Sequence:NP_065843.4Re-query CCDS DB by Nucleotide ID:NM_020792Re-query CCDS DB by Protein ID:NP_065843Link to BLAST:NP_065843.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065843.4 408 Q6PIU2-1 408 100% 0 0

Chromosomal Locations for CCDS 33893.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 172633475 172634092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 172635916 172636087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 172645623 172645692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 172647886 172648114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 172710847 172710984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1227 nt):
ATGAGGTCGTCCTGTGTCCTGCTCACCGCCCTGGTGGCGCTGGCCGCCTATTACGTCTACATCCCGCTGC
CTGGCTCCGTGTCCGACCCCTGGAAGCTGATGCTGCTGGACGCCACTTTCCGGGGTGCACAGCAAGTGAG
TAACCTGATCCACTACCTGGGACTGAGCCATCACCTGCTGGCACTGAATTTTATCATTGTTTCTTTTGGC
AAAAAAAGCGCGTGGTCTTCTGCCCAAGTGAAGGTGACCGACACAGACTTTGATGGTGTGGAAGTCAGAG
TGTTTGAAGGCCCTCCGAAGCCCGAAGAGCCACTGAAACGCAGCGTCGTTTATATCCACGGAGGAGGCTG
GGCCTTGGCAAGTGCAAAAATCAGGTATTATGATGAGCTGTGTACAGCAATGGCTGAGGAATTGAATGCT
GTCATTGTTTCCATTGAATACAGGCTAGTTCCAAAGGTTTATTTTCCTGAGCAAATTCATGATGTTGTAC
GGGCCACAAAGTATTTCCTGAAGCCAGAAGTCTTACAGAAGTATATGGTTGATCCAGGCAGAATTTGCAT
TTCTGGTGACAGTGCTGGTGGAAATCTGGCTGCTGCCCTTGGACAACAGTTTACTCAAGATGCCAGCCTA
AAAAATAAGCTCAAACTACAAGCTTTAATTTATCCAGTTCTTCAAGCTTTAGATTTTAACACACCATCTT
ATCAGCAAAATGTGAACACCCCAATCCTGCCCCGCTATGTCATGGTGAAGTATTGGGTGGACTACTTCAA
AGGCAACTATGACTTTGTGCAGGCAATGATCGTTAACAATCACACTTCACTTGATGTGGAAGAGGCTGCT
GCTGTCAGGGCCCGTCTAAACTGGACATCCCTCTTGCCTGCATCCTTCACAAAGAACTACAAGCCTGTTG
TACAGACCACAGGCAATGCCAGGATTGTCCAGGAGCTTCCTCAGTTGCTGGATGCCCGCTCCGCCCCACT
CATTGCAGACCAGGCAGTGCTGCAGCTCCTCCCAAAGACCTACATTCTGACGTGTGAGCATGATGTCCTC
AGAGACGATGGCATCATGTATGCCAAGCGTTTGGAGAGTGCCGGTGTGGAGGTGACCCTGGATCACTTTG
AGGATGGCTTTCACGGATGTATGATTTTCACTAGCTGGCCCACCAACTTCTCAGTGGGAATCCGGACTAG
GAATAGTTACATCAAGTGGCTAGATCAAAACCTGTAA

Translation (408 aa):
MRSSCVLLTALVALAAYYVYIPLPGSVSDPWKLMLLDATFRGAQQVSNLIHYLGLSHHLLALNFIIVSFG
KKSAWSSAQVKVTDTDFDGVEVRVFEGPPKPEEPLKRSVVYIHGGGWALASAKIRYYDELCTAMAEELNA
VIVSIEYRLVPKVYFPEQIHDVVRATKYFLKPEVLQKYMVDPGRICISGDSAGGNLAAALGQQFTQDASL
KNKLKLQALIYPVLQALDFNTPSYQQNVNTPILPRYVMVKYWVDYFKGNYDFVQAMIVNNHTSLDVEEAA
AVRARLNWTSLLPASFTKNYKPVVQTTGNARIVQELPQLLDARSAPLIADQAVLQLLPKTYILTCEHDVL
RDDGIMYAKRLESAGVEVTLDHFEDGFHGCMIFTSWPTNFSVGIRTRNSYIKWLDQNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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