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Report for CCDS34106.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34106.1 Public Homo sapiens 4 CEP44 24 110 108 CCDS HistoryNCBI Gene:80817Re-query CCDS DB by CCDS ID:34106.1Re-query CCDS DB by GeneID:80817See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34106.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296519.6 ENSP00000296519.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000296519.6Link to Ensembl Protein Viewer:ENSP00000296519.4Re-query CCDS DB by Nucleotide ID:ENST00000296519Re-query CCDS DB by Protein ID:ENSP00000296519
Original member Current member EBI ENST00000396791.7 ENSP00000380009.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396791.7Link to Ensembl Protein Viewer:ENSP00000380009.3Re-query CCDS DB by Nucleotide ID:ENST00000396791Re-query CCDS DB by Protein ID:ENSP00000380009
Original member Current member EBI ENST00000503780.6 ENSP00000423153.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000503780.6Link to Ensembl Protein Viewer:ENSP00000423153.1Re-query CCDS DB by Nucleotide ID:ENST00000503780Re-query CCDS DB by Protein ID:ENSP00000423153
Original member Current member NCBI NM_001040157.3 NP_001035247.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001040157.3Link to Protein Sequence:NP_001035247.1Re-query CCDS DB by Nucleotide ID:NM_001040157Re-query CCDS DB by Protein ID:NP_001035247Link to BLAST:NP_001035247.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035247.1 390 Q9C0F1-1 390 100% 0 0

Chromosomal Locations for CCDS 34106.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 174299122 174299210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174302039 174302186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174303703 174303849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174304247 174304369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174308689 174308859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174309850 174310056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174310783 174310858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174316166 174316290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174316530 174316567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174317335 174317383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGGCAACAGGTGACTTAAAAAGAAGCTTACGGAACCTAGAACAGGTGCTCCGCTTGCTAAATTATCCTG
AAGAGGTGGACTGTGTAGGTTTGATAAAGGGAGACCCAGCAGCATCTTTGCCCATCATCAGCTATTCTTT
TACCTCATACTCACCTTATGTAACAGAACTTATAATGGAATCCAATGTAGAGCTCATAGCAAAAAATGAC
TTGCGCTTTATAGATGCTGTCTATAAGCTTCTTCGTGATCAATTTAATTATAAACCAATTTTGACAAAAA
AGCAGTTTATCCAATGTGGGTTTGCAGAATGGAAAATCCAAATTGTTTGTGATATTTTGAATTGTGTGAT
GAAAAAGCACAAGGAATTAAGCAGTCTTCAGAAGATTCCATCACAACAAAGAAAGAAAATCAGTTCTGGT
AAGTCAGAACCTCCTTTGGGCAATGAGAAAATATCTGCAGAGGCTGTTGGCGTTGATATCAGTGGCAGGT
TTATGACCTCAGGAAAGAAGAAAGCTGTGGTGATTCGTCACTTGTATAATGAAGATAATGTTGACATTTC
TGAGGATACATTAAGTCCAATAACAGATGTTAATGAAGCAGTTGATGTGTCTGACTTAAATGCTACTGAA
ATAAAGATGCCTGAAGTAAAGGTTCCTGAAATCAAGGCTGAGCAACAGGATGTAAATGTTAATCCTGAGA
TTACTGCACTACAAACTATGCTTGCTGAATGCCAAGAAAATCTTAAGAAACTGACTTCGATAGAGAAAAG
GTTAGACTGTTTGGAACAAAAAATGAAAGGAAAAGTGATGGTAGATGAAAACACCTGGACTAATCTTCTT
AGTCGTGTCACTCTTCTTGAAACAGAAATGCTTTTGTCTAAAAAGAATGATGAATTTATAGAGTTTAATG
AAGTTAGTGAAGACTACGCTTCTTGTAGTGACATGGACCTTCTGAATCCTCACAGAAAAAGCGAAGTAGA
GAGGCCAGCAAGTATTCCTCTGTCCTCTGGCTATAGTACAGCATCATCAGATTCAACTCCCAGAGCCTCT
ACTGTTAATTACTGTGGTTTGAATGAGATTTCAGAGGAAACAACAATCCAGAAAATGGAAAGGATGAAAA
AAATGTTTGAAGAAACTGCAGAGTTACTGAAATGTCCAAATCACTACTTGTAG

Translation (390 aa):
MATGDLKRSLRNLEQVLRLLNYPEEVDCVGLIKGDPAASLPIISYSFTSYSPYVTELIMESNVELIAKND
LRFIDAVYKLLRDQFNYKPILTKKQFIQCGFAEWKIQIVCDILNCVMKKHKELSSLQKIPSQQRKKISSG
KSEPPLGNEKISAEAVGVDISGRFMTSGKKKAVVIRHLYNEDNVDISEDTLSPITDVNEAVDVSDLNATE
IKMPEVKVPEIKAEQQDVNVNPEITALQTMLAECQENLKKLTSIEKRLDCLEQKMKGKVMVDENTWTNLL
SRVTLLETEMLLSKKNDEFIEFNEVSEDYASCSDMDLLNPHRKSEVERPASIPLSSGYSTASSDSTPRAS
TVNYCGLNEISEETTIQKMERMKKMFEETAELLKCPNHYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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