NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS34203.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34203.1 Public Homo sapiens 5 MCTP1 24 110 108 CCDS HistoryNCBI Gene:79772Re-query CCDS DB by CCDS ID:34203.1Re-query CCDS DB by GeneID:79772See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34203.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000515393.6 ENSP00000424126.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000515393.6Link to Ensembl Protein Viewer:ENSP00000424126.1Re-query CCDS DB by Nucleotide ID:ENST00000515393Re-query CCDS DB by Protein ID:ENSP00000424126
Original member Current member NCBI NM_024717.7 NP_078993.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024717.7Link to Protein Sequence:NP_078993.4Re-query CCDS DB by Nucleotide ID:NM_024717Re-query CCDS DB by Protein ID:NP_078993Link to BLAST:NP_078993.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078993.4 999 Q6DN14-1 999 100% 0 0

Chromosomal Locations for CCDS 34203.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 94707496 94707567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94708512 94708609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94710818 94710927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94714777 94714886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94779110 94779163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94799013 94799132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94868333 94868452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94870417 94870491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94870872 94870973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94871315 94871417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94873139 94873241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94888879 94888972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94894649 94894835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94909251 94909381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94912806 94912976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94917896 94917973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94923962 94924021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94931953 94931991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94940084 94940195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94942348 94942427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94953219 94953361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95017367 95017484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95283856 95284575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3000 nt):
ATGGAGCCCCGGGCTGCCGCGGCGGGCGAGCCAGAGCCGCCGGCGGCGTCCTCCTCCTTCCAGGCCCGGC
TCTGGAAGAACCTGCAGCTGGGGGTGGGCAGGAGCAAGGGCGGCGGGGGCGGGCGCGCTGGGGGTCCAGA
GCGCCGCACTGCGGACACCCCGTCGCCCTCCCCGCCACCCCCGGTGGGCACAGGGAATGCACCGGCCAGG
GGGAGTGGTGCAGGCAGCAGGTGGAGCGGCTTCAAGAAGCGGAAGCAAGTGCTGGACCGAGTCTTCTCCT
CCTCGCAGCCCAACCTGTGCTGCTCGTCGCCGGAGCCCCTGGAGCCCGGCGGCGCCGGCAGAGCCGAGCA
GGGGTCCACGCTACGCCGCCGGATCCGCGAGCATTTGCTCCCCGCCGTAAAGGGGCCCGCGGCGGCCTCG
GGAGCAGCGGGAGGGACGCCTCCTGGCGGACGCTCCCCCGACTCAGCTCCTTCCTCTTCCTCCGCCTCAT
CCTCCCTGTCCTCCTCGCCCCAGCCTCCCCCGAGGGGGGACCGCGCCCGAGATGAGGGTGCACGGCGTCA
GGGCCCCGGGGCGCACTTGTGCCACCAGAAGAGCTCCTCTCTGCCGGGCACCGCCTGCCTGGAGCAGCTG
CTGGAGCCGCCGCCTCCTCCCGCAGAGCCGGCGCGGAGTCCCGCGGAGTCTCGGGCCCCGGAGACGGGCG
AGGAGCACGGCAGCAGCCAGAAAATAATAAACACTGCTGGAACCAGTAATGCAGAAGTCCCCTTGGCTGA
TCCCGGAATGTACCAGCTGGACATTACATTAAGAAGGGGTCAAAGTTTAGCTGCTCGAGATCGAGGAGGG
ACGAGTGATCCATATGTGAAGTTTAAAATCGGAGGAAAAGAAGTTTTTAGAAGTAAGATAATACACAAGA
ACCTCAACCCTGTGTGGGAAGAAAAAGCTTGTATTCTGGTTGATCATCTTAGGGAGCCATTGTATATAAA
GGTATTTGACTATGATTTTGGACTACAGGATGACTTTATGGGCTCAGCCTTTCTGGATCTGACACAATTG
GAGTTAAACAGGCCCACAGATGTGACCCTTACTCTGAAAGATCCTCATTATCCTGACCATGATCTTGGAA
TCATTTTGCTCTCAGTCATCCTTACCCCTAAAGAAGGAGAGTCCAGGGATGTGACAATGCTAATGAGGAA
GAGTTGGAAAAGATCAAGTAAGGAACTTTCAGAAAATGAAGTGGTTGGATCTTATTTCTCTGTGAAGTCT
CTCTTTTGGAGGACGTGCGGCAGGCCAGCTCTTCCTGTCCTGGGCTTCTGCAGAGCAGAGCTTCAGAATC
CTTATTGCAAAAATGTACAATTTCAGACCCAAAGTTTACGCCTATCAGACCTACACAGAAAATCGCATCT
TTGGAGAGGAATAGTCAGCATCACCTTGATTGAAGGGAGAGACCTCAAGGCCATGGATTCCAACGGGTTG
AGCGATCCCTACGTGAAGTTCCGGCTTGGGCATCAGAAGTACAAGAGCAAGATTATGCCAAAAACGTTGA
ATCCTCAGTGGAGGGAACAATTTGATTTTCACCTTTATGAAGAAAGAGGAGGAGTCATTGATATCACTGC
ATGGGACAAAGATGCTGGGAAAAGGGATGATTTCATTGGCAGGTGCCAGGTCGACCTGTCAGCCCTCAGT
AGGGAACAGACGCACAAGCTGGAGTTGCAGCTGGAAGAGGGTGAGGGACACCTGGTGCTGCTGGTCACTC
TGACAGCATCAGCCACAGTCAGCATCTCTGACCTGTCTGTCAACTCCCTGGAGGACCAGAAGGAACGAGA
GGAGATATTAAAGAGATATAGCCCATTGAGGATATTTCACAACCTGAAAGATGTGGGATTTCTCCAGGTG
AAAGTCATCAGAGCGGAAGGGTTAATGGCTGCCGACGTCACTGGAAAAAGTGACCCATTTTGTGTGGTAG
AACTGAACAACGATAGACTGCTAACACATACTGTCTACAAAAATCTCAATCCTGAGTGGAATAAAGTCTT
CACGTTCAACATTAAAGATATCCATTCAGTTCTTGAAGTGACAGTTTATGATGAAGATCGGGATCGAAGT
GCTGACTTTCTGGGCAAAGTTGCTATACCATTGCTGTCTATTCAAAATGGTGAACAGAAAGCCTACGTCT
TGAAAAACAAGCAGCTGACAGGGCCAACAAAGGGGGTCATCTATCTTGAAATAGATGTGATTTTTAATGC
TGTGAAAGCCAGCTTACGAACATTAATACCCAAAGAACAGAAGTACATTGAAGAGGAAAACAGACTCTCT
AAACAGCTGCTACTAAGAAACTTTATCAGAATGAAACGTTGTGTCATGGTGCTGGTAAATGCTGCATACT
ACGTTAATAGTTGCTTTGATTGGGATTCACCCCCAAGGAGTCTCGCTGCTTTTGTGCTCTTTCTCTTTGT
TGTCTGGAACTTTGAGCTCTACATGATACCACTGGTTTTGTTGTTACTATTGACATGGAACTACTTCTTG
ATAATATCAGGGAAAGATAACAGGCAACGTGATACAGTAGTGGAGGACATGCTAGAGGACGAGGAAGAAG
AAGATGACAAAGATGACAAGGACAGTGAAAAAAAGGGATTTATAAATAAAATCTATGCCATCCAGGAGGT
ATGTGTCAGTGTCCAGAACATCCTAGATGAAGTGGCTTCCTTTGGCGAAAGGATAAAGAATACTTTCAAC
TGGACTGTCCCATTCTTAAGCTGGCTGGCCATTGTAGCCCTCTGTGTGTTCACAGCCATCCTGTACTGCA
TTCCGCTGAGATACATTGTCCTTGTCTGGGGCATCAATAAATTTACAAAAAAGCTTCGGAGTCCATATGC
AATTGATAACAATGAACTACTTGACTTCCTTTCCAGAGTCCCTTCAGATGTACAAGTGGTGCAATACCAA
GAACTGAAACCAGATCCTTCTCATAGCCCATATAAAAGAAAGAAAAACAATCTTGGCTAG

Translation (999 aa):
MEPRAAAAGEPEPPAASSSFQARLWKNLQLGVGRSKGGGGGRAGGPERRTADTPSPSPPPPVGTGNAPAR
GSGAGSRWSGFKKRKQVLDRVFSSSQPNLCCSSPEPLEPGGAGRAEQGSTLRRRIREHLLPAVKGPAAAS
GAAGGTPPGGRSPDSAPSSSSASSSLSSSPQPPPRGDRARDEGARRQGPGAHLCHQKSSSLPGTACLEQL
LEPPPPPAEPARSPAESRAPETGEEHGSSQKIINTAGTSNAEVPLADPGMYQLDITLRRGQSLAARDRGG
TSDPYVKFKIGGKEVFRSKIIHKNLNPVWEEKACILVDHLREPLYIKVFDYDFGLQDDFMGSAFLDLTQL
ELNRPTDVTLTLKDPHYPDHDLGIILLSVILTPKEGESRDVTMLMRKSWKRSSKELSENEVVGSYFSVKS
LFWRTCGRPALPVLGFCRAELQNPYCKNVQFQTQSLRLSDLHRKSHLWRGIVSITLIEGRDLKAMDSNGL
SDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYEERGGVIDITAWDKDAGKRDDFIGRCQVDLSALS
REQTHKLELQLEEGEGHLVLLVTLTASATVSISDLSVNSLEDQKEREEILKRYSPLRIFHNLKDVGFLQV
KVIRAEGLMAADVTGKSDPFCVVELNNDRLLTHTVYKNLNPEWNKVFTFNIKDIHSVLEVTVYDEDRDRS
ADFLGKVAIPLLSIQNGEQKAYVLKNKQLTGPTKGVIYLEIDVIFNAVKASLRTLIPKEQKYIEEENRLS
KQLLLRNFIRMKRCVMVLVNAAYYVNSCFDWDSPPRSLAAFVLFLFVVWNFELYMIPLVLLLLLTWNYFL
IISGKDNRQRDTVVEDMLEDEEEEDDKDDKDSEKKGFINKIYAIQEVCVSVQNILDEVASFGERIKNTFN
WTVPFLSWLAIVALCVFTAILYCIPLRYIVLVWGINKFTKKLRSPYAIDNNELLDFLSRVPSDVQVVQYQ
ELKPDPSHSPYKRKKNNLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH