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Report for CCDS34268.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34268.1 Public Homo sapiens 5 SPINK6 24 110 108 CCDS HistoryNCBI Gene:404203Re-query CCDS DB by CCDS ID:34268.1Re-query CCDS DB by GeneID:404203See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34268.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325630.3 ENSP00000324870.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000325630.3Link to Ensembl Protein Viewer:ENSP00000324870.2Re-query CCDS DB by Nucleotide ID:ENST00000325630Re-query CCDS DB by Protein ID:ENSP00000324870
Original member Current member EBI ENST00000621437.4 ENSP00000481309.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621437.4Link to Ensembl Protein Viewer:ENSP00000481309.1Re-query CCDS DB by Nucleotide ID:ENST00000621437Re-query CCDS DB by Protein ID:ENSP00000481309
Original member Current member NCBI NM_001195290.2 NP_001182219.1 Accepted alive Link to Nucleotide Sequence:NM_001195290.2Link to Protein Sequence:NP_001182219.1Re-query CCDS DB by Nucleotide ID:NM_001195290Re-query CCDS DB by Protein ID:NP_001182219Link to BLAST:NP_001182219.1
Original member Current member NCBI NM_205841.4 NP_995313.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_205841.4Link to Protein Sequence:NP_995313.2Re-query CCDS DB by Nucleotide ID:NM_205841Re-query CCDS DB by Protein ID:NP_995313Link to BLAST:NP_995313.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182219.1 80 Q6UWN8 80 100% 0 0
NP_995313.2 80 Q6UWN8 80 100% 0 0

Chromosomal Locations for CCDS 34268.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 148203097 148203154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148206036 148206058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148213910 148214025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148214905 148214950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (243 nt):
ATGAAACTGTCAGGCATGTTTCTGCTCCTCTCTCTGGCTCTTTTCTGCTTTTTAACAGGTGTCTTCAGTC
AGGGAGGACAGGTTGACTGTGGTGAGTTCCAGGACCCCAAGGTCTACTGCACTCGGGAATCTAACCCACA
CTGTGGCTCTGATGGCCAGACATATGGCAATAAATGTGCCTTCTGTAAGGCCATAGTGAAAAGTGGTGGA
AAGATTAGCCTAAAGCATCCTGGAAAATGCTGA

Translation (80 aa):
MKLSGMFLLLSLALFCFLTGVFSQGGQVDCGEFQDPKVYCTRESNPHCGSDGQTYGNKCAFCKAIVKSGG
KISLKHPGKC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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