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Report for CCDS34343.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34343.1 Public Homo sapiens 6 KDM1B 24 110 108 CCDS HistoryNCBI Gene:221656Re-query CCDS DB by CCDS ID:34343.1Re-query CCDS DB by GeneID:221656See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34343.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297792.9 ENSP00000297792.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000297792.9Link to Ensembl Protein Viewer:ENSP00000297792.5Re-query CCDS DB by Nucleotide ID:ENST00000297792Re-query CCDS DB by Protein ID:ENSP00000297792
Original member Current member NCBI NM_153042.4 NP_694587.3 Accepted alive Link to Nucleotide Sequence:NM_153042.4Link to Protein Sequence:NP_694587.3Re-query CCDS DB by Nucleotide ID:NM_153042Re-query CCDS DB by Protein ID:NP_694587Link to BLAST:NP_694587.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694587.3 590 Q8NB78-2 590 100% 0 0

Chromosomal Locations for CCDS 34343.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 18159896 18159982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18161327 18161454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18162835 18162924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18166267 18166378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18171363 18171479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18185772 18185810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18197057 18197233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18197587 18197661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18200439 18200576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18207398 18207529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18208132 18208206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18212488 18212604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18213656 18213781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18215007 18215129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18217733 18217885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18221909 18221992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1773 nt):
ATGGCAACTCCACGGGGGAGGACAAAGAAAAAAGCATCTTTTGATCATTCTCCGGATAGCCTTCCTTTGA
GGAGCTCCGGTAGGCAGGCGAAGAAGAAAGCAACAGAGACAACAGATGAGGATGAAGATGGTGGCTCAGA
GAAGAAGTACAGGAAATGTGAAAAGGCAGGCTGTACGGCAACATGTCCTGTGTGCTTTGCAAGTGCTTCT
GAAAGATGTGCCAAAAATGGCTACACCTCCCGATGGTATCATCTCTCCTGTGGGGAACATTTCTGTAATG
AATGCTTTGACCATTACTACAGAAGCCATAAGGATGGATATGACAAATATACTACATGGAAAAAAATATG
GACTAGCAATGGCAAAACCGAACCTAGTCCCAAAGCTTTCATGGCAGACCAGCAACTCCCCTACTGGGTT
CAGTGTACAAAACCTGAGTGTAGAAAATGGAGGCAGCTTACCAAGGAAATCCAGCTTACTCCACAGATAG
CCAAGACTTATCGATGCGGTATGAAACCAAATACTGCTATTAAGCCTGAGACCTCAGATCATTGTTCCCT
CCCAGAGGATCTAGAAGCTCTTACTCCTCAGAAATGTATTCCTCACATCATCGTCCGGGGTCTCGTGCGT
ATTCGATGCGTTCAGGAAGTGGAGAGAATACTGTATTTTATGACCAGAAAAGGTCTCATCAACACTGGAG
TTCTCAGCGTGGGAGCCGACCAGTATCTTCTCCCTAAGGACTACCACAATAAATCAGTCATCATTATCGG
GGCTGGTCCAGCAGGATTAGCAGCTGCTAGGCAACTGCATAACTTTGGAATTAAGGTGACTGTCCTGGAA
GCCAAAGACAGAATTGGAGGCCGAGTCTGGGATGATAAATCTTTTAAAGGCGTCACAGTGGGAAGAGGAG
CTCAGATTGTCAATGGGTGTATTAACAACCCAGTAGCATTAATGTGTGAACAAGTATCTGCTCGCTCGTG
GGACCACAATGAATTCTTTGCCCAGTTTGCTGGTGACCACACTCTGCTAACTCCCGGGTACTCGGTGATA
ATTGAAAAACTGGCAGAAGGGCTTGACATTCAACTCAAATCTCCAGTGCAGTGTATTGATTATTCTGGAG
ATGAAGTGCAGGTTACCACTACAGATGGCACAGGGTATTCTGCACAAAAGGTATTAGTCACTGTACCACT
GGCTTTACTACAGAAAGGTGCCATTCAGTTTAATCCACCGTTGTCAGAGAAGAAGATGAAGGCTATCAAC
AGCTTAGGCGCAGGCATCATTGAAAAGATTGCCTTGCAATTTCCGTATAGATTTTGGGACAGTAAAGTAC
AAGGGGCTGACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAGGGCTTTTTGCCGTGTTCTATGA
CATGGATCCCCAGAAGAAGCACAGCGTGCTGATGTCTGTGATTGCCGGGGAGGCTGTCGCATCCGTGAGG
ACCCTGGATGACAAACAGGTGCTGCAGCAGTGCATGGCCACGCTCCGGGAGCTGTTCAAGGAGCAGGAGG
TCCCAGATCCCACAAAGTATTTTGTCACTCGGTGGAGCACAGACCCATGGATCCAGATGGCATACAGTTT
TGTGAAGACAGGTGGAAGTGGGGAGGCCTACGATATCATTGCTGAAGACATTCAAGGAACCGTCTTTTTC
GCTGGTGAGGCAACAAACAGGCATTTCCCACAAACTGTTACAGGGGCATATTTGAGTGGCGTTCGAGAAG
CAAGCAAGATTGCAGCATTTTAA

Translation (590 aa):
MATPRGRTKKKASFDHSPDSLPLRSSGRQAKKKATETTDEDEDGGSEKKYRKCEKAGCTATCPVCFASAS
ERCAKNGYTSRWYHLSCGEHFCNECFDHYYRSHKDGYDKYTTWKKIWTSNGKTEPSPKAFMADQQLPYWV
QCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKPETSDHCSLPEDLEALTPQKCIPHIIVRGLVR
IRCVQEVERILYFMTRKGLINTGVLSVGADQYLLPKDYHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLE
AKDRIGGRVWDDKSFKGVTVGRGAQIVNGCINNPVALMCEQVSARSWDHNEFFAQFAGDHTLLTPGYSVI
IEKLAEGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAIN
SLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVR
TLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFF
AGEATNRHFPQTVTGAYLSGVREASKIAAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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